Arabidopsis lyrata (lyrate rockcress): 9317485
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Entry
9317485 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9317485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9317485
03012 Translation factors [BR:
aly03012
]
9317485
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9317485
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9317485
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
9317485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
ATPase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9317485
NCBI-ProteinID:
XP_020883696
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MQQLSLSCFSTLRFLLPFSSKLSPLPSLFHTAAMPPHGPNSQGGRRGGGFSSGRAGGRRG
GRGGGGRGGGEQRWWDPVWRAERLRQQQVEMEVLDENEWWNKIEQWKTGGEQELLIKRNF
SRGDQQTLSDMAYQMGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQKEIKMSTETE
RKLGSLLKTTQESGSSSAKASPFNGQQDRTSTLGLKRPDSASNLPDSLQKEKFSVALKDR
QEKLKATESVKALHAFREKLPAFKMKEGFLNSVSENQVLVVSGETGCGKTTQLPQFLLEE
EISSLRGADCNIICTQPRRISAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFC
TTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN
ADMFSTYFGNSPTMHIPGFTFPVAELFLEDVLEKSRYSIKSSDSGNYQGNSRGRRRDSES
KKDDLTTLFEDIDINSHYKSYSSATRNSLEAWSGAQIDVDLVEATIEYICRLEGGGAILV
FLTGWDEISKLLEKINGNNLLGDSSKFLVLPLHGSMPTVNQREIFDRPPPNKRKIVLATN
IAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQAGVCY
RLYPKVIYDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAVENAIE
LLKTIGALNDMEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIAAALAYRSPFV
LPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPVTLRMM
EDMRNQFLDLLSDIGFVDKSKPNAYNQYSHDMEMISAILCAGLYPNVVQCKRRGKRTAFY
TKELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALLMFGGNLMPS
KTGEGIEMLGGYLHFSASKNVLDLIQRLRGEVDKLLNKKIEDPSLDITVEGKGVVSAVVE
LLRSQNIRY
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaactgtccctctcttgtttctccacgcttcgctttctccttccattttcttcc
aaactctctccgcttccttctctctttcacacagccgctatgcctcctcacggtcctaat
tctcaaggtggtcgtcgaggtggaggtttctcctccggtcgtgctggaggtcgtcgtggt
ggacgcggcggcggcggtcgtggcggcggggaacagcgatggtgggatccggtgtggaga
gctgagcgtttgcgccaacaacaagttgagatggaagttcttgatgagaatgaatggtgg
aacaagattgagcaatggaaaacaggaggagaacaagagttgctaattaagcgcaatttt
agccgcggagatcagcaaacactttctgatatggcttatcagatgggtctttacttccat
gcatacaataaagggaaggctcttgtagttagcaaagttcctttgccagattatcgagcg
gatcttgatgaacggcatggatccactcagaaagagattaaaatgtccacagagactgag
agaaaacttggaagtcttttgaaaacaacacaagaatcagggtcttctagtgccaaagct
tcaccatttaatggtcaacaggatcgtacttcaactcttggcttgaaaagacctgattct
gcttccaacttgccggattctcttcagaaagaaaaattcagtgttgcactcaaggataga
caggaaaagctaaaggcaactgagagtgtaaaagcacttcatgctttcagagaaaagcta
cctgcttttaaaatgaaagaggggtttcttaactctgtttcagaaaatcaggtattggta
gtttcaggagagaccgggtgtggtaaaacaacacaacttcctcaatttttattggaagaa
gaaatatcatccctaagaggtgctgattgcaacataatttgcactcaacctcgacgtata
tctgccatatctgttgcttctcgtatatctgctgaaagaggtgaatccattggtgaatct
gtgggttatcagattcgtctagaatcaaagcgttctgatcaaacacgattgctattttgc
actactggtgttttacttcggcggctgattgaggatcccaatttgactaacgtaagccat
ttgctcgtggatgagattcacgagagaggcatgaatgaagattttctactaatcatacta
cgtgatctccttcctcgacgcccggatttgcgtcttattctgatgagtgctacgattaac
gctgacatgttctcaacatattttgggaactctcccactatgcacatcccggggttcaca
ttccctgtggcagagttattcctagaagatgtactggagaaaagtcgttatagtattaag
tcgtctgactcagggaattatcaaggtaattcgagaggtagaagaagagactcagaatcc
aagaaagatgacctgactactcttttcgaggatattgacatcaattctcactataaaagt
tatagctcggccacaaggaattctctcgaagcatggtctggtgcacagattgatgtggat
ctggtggaggcaacaattgaatatatttgtcgtcttgaaggtggtggggcgattcttgtc
ttccttactggctgggatgagatttcaaaactgcttgagaaaattaatgggaacaacttg
cttggagattctagcaagttcttagttcttcctctacatggttcaatgccgacagttaat
caacgtgaaatttttgaccgtccacctcctaacaaacggaaaatagttttggctacaaac
attgccgagagtagtattaccattgatgatgttgtatatgttgtggattgtggtaaagca
aaggaaactagctatgatgctttgaacaaggtggcatgtctcttgccatcatggatttca
aaggcttcagcgcaccagagacgaggtcgtgctggacgtgttcaagctggagtttgttat
aggttgtatccaaaagttatctatgatgcttttccacagtatcaattaccagaaatcata
cggactccattgcaagagctatgcctgcatatcaaaagtttgcaagttggatccatagga
tcattcttggcaaaggcactgcagccaccagatgcacttgctgttgagaatgctattgaa
cttctcaaaacaattggggctttaaatgacatggaagaacttacaccccttggtcggcat
ctttgcactctacccgtggacccaaatataggaaagatgcttcttattggagctatcttc
cagtgcgtcaatcctgctttgacaatcgccgctgctctggcatatcgtagcccatttgtc
ttaccattaaataggaaagaggaagccgatgaagccaaaagatattttgctggtgattcc
tgcagtgatcacattgctcttcttaaggcatatgagggatatcgggatgcaaagcgtggt
ggaaacgaaaaagatttttgttggcaaaactttctttcccctgtaactctaaggatgatg
gaggatatgagaaaccagtttcttgatcttctatcagatatagggttcgtagacaaatca
aagccaaatgcatacaaccaatatagccacgatatggagatgataagcgcgattctgtgt
gcggggctgtacccaaatgttgtccaatgcaaaagaagagggaagcgcactgcattctat
actaaagagttgggtaaagttgatattcaccctggatctgtcaacgcaagagtgaatctc
ttctcattgccgtacttggtctacagcgaaaaggtgaagacaacaagtgtttatatccga
gactcgacaaacatatcagattatgcactccttatgtttggtggcaatcttatgccaagc
aaaaccggggaaggtatagagatgttgggagggtatctccatttctcagcctcaaagaac
gtcttggatctgatacagagattgcggggagaggtggacaagctgctgaataagaagata
gaggatccgagtttggacataacggtggaggggaaaggagtggtctcagctgtggtagag
ttgttacgtagccaaaacattaggtattaa
DBGET
integrated database retrieval system
