Arabidopsis lyrata (lyrate rockcress): 9317706
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Entry
9317706 CDS
T01578
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9317706
03015 mRNA surveillance pathway
9317706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9317706
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
9317706
mRNA cycle factors
P-body specific factors
9317706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
LRR_R13L1-DRL21
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
9317706
NCBI-ProteinID:
XP_002881640
UniProt:
D7LD23
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MDHPEDETHSEKQDDEEALARLEEIKKSVEAKMTLRQNNLNPERPDSTYLRTLDSSIKRN
TAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQ
RYKEFSPSLTQGLLKVFFPGKSAEDLDADKNSKAMKKRSTLKLLLELYYVGVIEDSNIFI
NIIKDLTSVEQLKDRDTTQTNLTLLASFARQGRVFLGLPISGQDEDFFKGLDVSADQKKS
FKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHLYR
NISSLAESLDMQPPVMPEDGTTRLTAGDEASPSGAVKDTSVPEPIWDDEDTKTFYECLPD
LRAFVPAVLLGEAEPKSNEQSAKAKDKSSESSSEVVENQQTTEDTTEVSADSGSMADGSN
AEQPKEKEEVEKEKAKDARKEKGKEKDGDKKMENEKEKGKSLDVANFERLLQRLPGCVSR
DLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLASCMKDIPSMLVQ
MLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEFTHHNIDV
ACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSA
RISKVRPPLHQYIRKLLFSDLDKDSIANVLKQLRKLPWSECEQYILKCFMKVHKGKYGQI
HLIASLTSGLSRHHDEFAVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYEHV
DSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRIRMVIILLETCGHYFDRGSSKKRLDQF
LIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYATIDEVNAAILQLEEREHASSGDK
VSIERHSDTKPSNRPSSDVISSNGKSTAKDIRENGEAHGEESDSDSGSGSVVRDGQNEEL
DDGNHERGSESGDGDDFDDGDGPGSDDDKFRVRQKVVTVDPEEQADFDQELKALLQESME
QRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEDLLDEENGEQREVQVKVLVK
RGNKQQTRQMLIPSDCSLVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANALGTQILN
WTSGGSRGSTRTGEGSGKSGGSRHRFYYHQGGGGSYHARRK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggatcatccagaagatgaaacccacagcgagaaacaagacgacgaggaagctcttgct
cgtcttgaagagattaagaagtcagtggaagctaaaatgactcttcgtcaaaataatctc
aatcctgaacgacctgattcaacatatcttaggactctggattctagtatcaagcggaat
acagcagttatcaagaagttaaagcagatcaatgaggagcagcgagaagggttgatggat
gatctccgaggtgttaaccttagcaagttcgttagtgaagctgttactgccatttgtgag
gctaagctcaaaagctcagatatacaagcagctgttcagatttgctcgctacttcatcag
aggtataaagaattttctcctagtctaacacaaggactcttgaaagtcttctttcctgga
aaatctgccgaagatttagatgcggataaaaactcaaaggccatgaaaaagcgcagtacc
ctaaaacttcttctggagctctactatgttggagtaatagaagatagtaacatctttatc
aatattattaaggatcttaccagtgttgaacaactgaaagacagagatacgacccaaaca
aatctgacacttcttgccagttttgctcggcaaggaagagtttttctggggcttcctatt
tctggacaagacgaagattttttcaagggtctcgacgtttctgcagatcagaaaaagagt
tttaagaaagctttcaacacatattatgatgctcttgcagatctccttcagtctgagcac
aagttacttctccaaatggagaaagaaaatgcaaaactggtaaatgctaaaggggagctt
agtgaagacagtgcatcttcttatgaaaagctgaggaaatcatatgaccatctctatcga
aatatctcatctttggccgaatcacttgatatgcaacctcctgttatgccagaggatggt
acaactaggctcacagcaggggacgaagcctcaccttctggtgctgtaaaagatacatct
gtcccggaacctatttgggacgacgaagacaccaagacattttacgagtgcttgcctgat
ctgagggcatttgttccagcagtattgttgggagaagcagagcccaaatcaaatgagcaa
tctgctaaggcaaaagataaatcctctgagtctagctctgaagttgtcgaaaatcaacaa
acaactgaagatacaacagaggtttctgctgattctggtagtatggctgatggatcaaat
gctgagcagccaaaagagaaggaagaagtagaaaaggaaaaggctaaggatgctagaaag
gaaaaaggaaaagaaaaggatggtgacaagaaaatggaaaatgagaaggagaaagggaag
agccttgacgtggcaaactttgaaagattgttacagcgacttcctggttgcgtaagccgt
gatcttattgaccagttaacggtggaatattgttatttaaattccaagacaaacagaaaa
aaacttgtcaaagcgttatttaatgtccctaggacatctctggagttgctagcatactat
tcgcgtatggttgcaacactagcatcgtgcatgaaggacatcccgtctatgcttgtgcag
atgttggaggacgagtttaattctctggtccataaaaaggaccaaatgaatattgaaaca
aaaatccgaaacatcagatttattggagaactctgcaagtttaaaattgtacctgctggt
cttgtattcagttgtttgaaggcttgcttagatgaatttactcatcataacattgatgtt
gcttgcaatcttctggagacatgtggccgtttcctttatcggtctcccgaaaccacactc
aggatgacaaatatgctggacatattgatgcgcctgaaaaatgtcaagaatttagatcct
cgtcaaagcactcttgtggaaaatgcctactacctgtgtaaacctcctgaaagatcagca
agaatttctaaagttcgtccaccattgcatcagtatattcgaaaattgctattctcggat
cttgataaagattccattgcaaacgtactaaagcaactgcggaagctgccatggagtgaa
tgtgagcaatacatcttaaagtgctttatgaaggttcacaagggaaagtatggtcagatt
cacttaattgcttccttgacttctggtttgagccgccatcatgatgagtttgcggtggct
gttgttgatgaggtactggaggagataagggttgggcttgagttgaatgaatatggggca
caacagaagcgactagcccatatgagattcttaggggagctgtacaactatgagcatgta
gattcatctgtgatttttgagacgctttatctaactcttttatatggtcatgatacttca
gagcaagaggtgctggatccaccagaagattttttccgtatcaggatggttatcattctt
ctggaaacctgtgggcactactttgatcgaggttcttcaaagaaaaggcttgatcaattt
ttaatacacttccagagatacatcctgagcaagggccaccttccactggatattgaattt
gacttgcaggatctatttgccaatttgaggcccaatatgactcgttacgcaaccattgat
gaggtcaatgcagctatacttcagctggaagagcgtgaacatgcttcttcaggagacaaa
gtcagtatagaaagacactcagatacaaagccttcaaacaggccgtcttctgatgttatc
tcttctaacgggaaaagtactgccaaagatattagagagaatggagaagctcacggagaa
gaaagcgatagcgattctggtagtggctccgtggtccgagatggacagaacgaagagttg
gatgatggaaatcatgagcggggatctgagagtggcgatggggatgactttgatgatggc
gatgggcctggatctgatgatgataaatttcgtgtaaggcaaaaggtggttaccgtagat
cctgaggaacaagcggactttgatcaagaactgaaggccttacttcaggagagcatggag
caaaggaagctagaattacgtggtagaccggcattgaacatgacaataccgatgagtgtt
tttgaaggatctggaaaagatcaccatcattttgggcgggtagtaggtgaaaacggtgaa
gatttgttggatgaagagaatggagagcaaagagaggttcaagtgaaggtcctagtgaag
agaggaaacaaacaacaaacaaggcaaatgctaatcccgagtgattgttccttagtgcag
agcacaaaacagaaagaagccgcggaattggaagagaaacaagacataaagaggttagta
cttgagtacaatgagagggacgaagaggaagctaatgcgttaggaacacagatattgaat
tggacttctggaggaagcagaggatccactcgaaccggggaaggcagtgggaagagtggt
gggtctcgtcaccggttttattatcatcaaggaggtggtggttcgtatcatgcccgacga
aagtaa
DBGET
integrated database retrieval system
