Arabidopsis lyrata (lyrate rockcress): 9317738
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Entry
9317738 CDS
T01578
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9317738
04121 Ubiquitin system [BR:
aly04121
]
9317738
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9317738
Membrane trafficking [BR:
aly04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
9317738
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9317738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zf-C3HC4_3
zf-RING_UBOX
zf-ANAPC11
zf-HC5HC2H_2
zf-HC5HC2H
Rad50_zn_hook
FAR1_N
GP46_beta
Motif
Other DBs
NCBI-GeneID:
9317738
NCBI-ProteinID:
XP_002881672
UniProt:
D7LDR0
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MASGSYWCYSCSRFVWVSDSLSCPDCDGGFLEHIQETLDFTPSDSFHRLTTTTQHRSPTR
FPPSSSSSSTPSASMHASTAENSPTPTTVTRTRSNRSPNPVIVLRGSGAPSDVSEGLDRS
AFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRIHRSCEHPPASKSA
IEALPLIEIDLTHLESDSQSHCAVCKENFVLQSSAREMPCNHIYHPDCILPWLAIRNSCP
VCRHELPAEDLTDASGAALTVTATAEEEEDSAAGLTIWRLPGGGFAVGRIPGGWRGGDRM
MPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGSRERGGGFAGRIMRLFGCFSGSSGSI
AAAAASSGSGSRIRVTRRTRSFSMFSTASSSSRRRNWLA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggatcttactggtgttatagttgtagccgattcgtttgggtttccgattct
ctctcttgccctgattgcgacggtggtttcctcgaacacatccaagaaactctcgatttc
acaccttccgattccttccaccgtctcaccaccaccactcaacatcgcagccccactcgc
ttccctccttcctcctcttcttcttcgaccccctccgcttctatgcacgcttccaccgcc
gagaacagtcccactcctaccaccgttactcgtacccgaagcaatcgatctcctaatccc
gttattgttctccgtggatctggtgctccttctgatgtttccgaaggtttagatcgatct
gcttttcagatgtattacgatgatggtactgattctggtcttagacctttaccaccgagt
atgactgagtttttgttaggttctggatttgatcgcttgttagatcagatctctcagatc
gagcttaacaccaatcggattcatcgttcttgtgaacatcctccggcttctaaatcggcc
attgaagctttacctctgattgaaatcgatctgactcatctcgaatcggattctcaatct
cattgcgctgtttgcaaagagaatttcgttttgcaatcatctgctcgtgagatgccgtgt
aatcacatctatcatcctgattgtatccttccttggcttgcgattcgaaactcttgtccg
gtttgccgtcatgagctaccggcggaggatctcaccgacgcaagcggtgccgctttgact
gttaccgctactgcagaggaagaggaagactccgcggcggggttgacgatttggaggtta
ccaggtggaggattcgcggtagggagaatccctggtggttggagaggaggtgatagaatg
atgccggtggtttacacggaggttgacggtggaagactcggcgatgagagacttccgagg
agagtagcttggggttcgagaagaggaggaagagatggaggtagtagagagagaggtggc
gggtttgcgggtcggatcatgaggctttttgggtgttttagtgggtcatctggatccata
gctgctgccgctgcatcatccgggtccgggtcgagaattcgggttacccgtagaaccagg
tcgttctctatgtttagtacggcgtcgtcttcgtcaaggagacgaaattggctagcgtga
DBGET
integrated database retrieval system
