Arabidopsis lyrata (lyrate rockcress): 9317809
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Entry
9317809 CDS
T01578
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9317809
04121 Ubiquitin system [BR:
aly04121
]
9317809
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9317809
Membrane trafficking [BR:
aly04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
9317809
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9317809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-RING_UBOX
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
Rad50_zn_hook
zf-Nse
zf-RING_16
DZR_2
Zn_ribbon_6
zf-FPG_IleRS
Motif
Other DBs
NCBI-GeneID:
9317809
NCBI-ProteinID:
XP_020883149
LinkDB
All DBs
Position
Unknown
AA seq
329 aa
AA seq
DB search
MSSSRNTHWCHRCQRAVQLHGQDPVCSYCGGGFVEELDMAEASPFDMFRAHSHRGVVERD
PTFDLMDAFSAFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLSGDNA
VEALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSSIDALPTIKI
AQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSAR
GPSSSQNRTTTRNYRSNSSNSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGPRN
SDTTDENHNYHQQQQQQSYMGYSGWPFDY
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcagtcgaaatacccactggtgtcacagatgccagcgtgctgtccagcttcac
ggccaagatcctgtatgctcttattgcggaggtggatttgttgaagaacttgatatggct
gaagccagcccctttgatatgtttagagctcacagtcacaggggtgttgtagaacgtgat
ccgacttttgatctcatggatgctttctctgcgtttatgaggaatcgcttagccgaaagg
agccacgacagagaaatcagaggaagaaccatcagttcaggtcctgaaaactttcctggt
ctggcccctttattgatctttggtggtcaggtcccttatagactgtctggagacaatgca
gttgaagccctcttcaatggcggatcacctggcattggcatcacacgtggtaacaccggc
gactacttcttcggtcccggtcttgaagaattgttcgagcagctttcagctggcactact
cgccgaggcccaccacccgcaccgagatcatcaatagatgcattgccaaccatcaagatt
gcgcagaggcatctcagatcatcagactcgaactgtcctgtgtgcaaagacgaattcgaa
ctgggatcagaagcgaaacagatgccatgtaaccacatctatcattctgactgcattgtc
ccttggctggtccagcacaactcttgcccggtctgtcgccaagagctaccatcagctaga
ggaccttcaagcagtcaaaacagaaccaccaccagaaactacagaagtaatagtagtaat
agcagtagtaacagtcgtgagaacggcaacgaaagaaggaatcctttctcttccttctgg
ccattccgttcgtcaggttcaagctcaagctccactcaaaaccgtggaggcccaagaaac
tcagacacaaccgatgagaaccataactatcatcaacagcagcagcaacaatcatatatg
ggttacagtggctggccttttgattactaa
DBGET
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