Arabidopsis lyrata (lyrate rockcress): 9318000
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Entry
9318000 CDS
T01578
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9318000
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9318000
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
9318000
NCBI-ProteinID:
XP_002881934
UniProt:
D7LKJ3
LinkDB
All DBs
Position
Unknown
AA seq
405 aa
AA seq
DB search
MVYNTSCLILPLALIFLDFILISSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVAC
ASANPTMIIVPKGRFLVGNLVFQGNECKQAPISIRIAGSIVAPGDFRIIAGSEHWISFED
VTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGAKSLMFSGSNNIKINGLTSINSQRFHIV
IDKSNNVNIDGVKVSADANSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTDVFIQ
TIQCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTDNGVRIKTWGKDSNSFARNIVFQ
HINMKMVKNPIIIDQHYCLDKPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKDKPC
TGIVMDDVNLVSVNRPAQASCDNANGLANDVVPFTPCLKSEIIMT
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggtttataacacttcatgccttattcttcctttggctctcatctttcttgatttcatc
ttaatctcatcattagcccatccgattccaagcacactcaacgtcttatcctatggagct
aaaccagacggctcaaaagactcaaccaaagccttcttagccgcatgggacgtcgcttgt
gcctcggctaaccctacaatgataatcgtaccaaaaggacggttcttggtcgggaacctt
gttttccaaggcaacgagtgtaagcaagcgccaatatctattcgtatagcaggctcaatt
gttgctccgggagattttagaattatcgcaggctcagaacattggatctcgttcgaggat
gttactgatgtttcaatctacggtggaatacttgacgctcaaggcactagtttatggaaa
tgcaagaacaacggtggccataattgtcctactggtgccaagagtttgatgtttagtggg
tcaaataacatcaaaatcaatggtttaacgtcgataaacagccagagattccatatagtc
atcgataaaagcaataacgtgaacattgacggcgttaaggtttctgctgatgcgaatagc
cctaacaccgatgggattcacgtcgaatcatctcactccgtccacatcactaactctaga
atcggaaccggtgatgattgcatctccatcggtccaggatctactgatgttttcatacaa
acaattcaatgtggtccaggccacggcatcagtattggaagtcttggacgagcagaggaa
gaacaaggagtggataacgtgaccgtgagtaacgtggatttcatgggaacggataacgga
gttaggatcaaaacatggggaaaagatagcaacagtttcgctagaaacatcgttttccaa
catattaatatgaagatggtcaagaacccgatcattatagaccaacactactgtcttgac
aaaccttgccctaaacaggaatctggagttaaagtatcaaatgtgagatatgaagatata
cacgggacttcgaatacggaagtggcggttttgttagattgtagtaaggataaaccatgt
accggtattgtaatggacgatgtgaatcttgtctctgttaatcgaccggctcaggcgtct
tgcgataatgcaaatggattagcgaacgacgtcgtcccattcactccttgtctaaagagc
gagataattatgacttaa
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