Arabidopsis lyrata (lyrate rockcress): 9318083
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Entry
9318083 CDS
T01578
Name
(RefSeq) spastin isoform X2
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9318083
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
aly04812
]
9318083
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
9318083
Membrane trafficking [BR:
aly04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
9318083
Cytoskeleton proteins [BR:
aly04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
9318083
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
Vps4_C
AAA_5
AAA_22
AAA_14
NPHP3_N
AAA_16
TIP49
Mg_chelatase
AAA_2
DUF815
RNA_helicase
nSTAND3
AAA_25
IstB_IS21
ABC_tran
Guanylate_kin
AAA_33
AAA_24
NACHT
nSTAND6
Motif
Other DBs
NCBI-GeneID:
9318083
NCBI-ProteinID:
XP_002882017
UniProt:
D7LCJ9
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MSFLRGIIDSFSSILNEESKQDSSVSSSSTSSGSMNGIDGVPVTNERIAYKLKGYFDLAK
EEIAKGIRAEEWGLHDDALLHYRNAQRIMNEASSTPSPSYISSSEKEKVRSYREKISNWQ
NQVSERLQALGKRTGVGVSENKRTVASPSSASVSSTASRYRKTSLQKTPVPRGGIATAKN
PKDAAASPKPVKESGNVYDDKLVEMINTTIVDRSPSVKWDDVAGLDGAKQALLEMVILPA
KRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKL
VKTLFQVAISRQPSVIFMDEIDSIMSTRSISENEASRRLKSEFLIQFDGVTSNPDDLVIV
IGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSNDDIDKIVKETE
GYSGSDLQALCEEAAMMPIRELGADILTVQANKVRPLRYDDFRKSMAVIRPSLSKSKWEE
LERWNSEFGSN
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagttttctcagaggtataattgattcgtttagctcgattctcaacgaagaatctaag
caagattctagtgtatcatcatcatcaacttcttctggttccatgaatggtatcgatgga
gttccggttactaacgaacgaattgcgtataagcttaaaggatacttcgatttagcgaaa
gaggaaatcgctaaaggtattagagcagaagagtggggtttacatgatgatgctcttctt
cattataggaatgctcagaggatcatgaatgaagctagttctactccttctccttcctat
attagttcaagtgaaaaggagaaggtgagatcgtaccgagagaagatttcaaattggcaa
aatcaagtatctgaaagattgcaagctttgggtaagcgtacaggtgttggagtgtctgag
aataagagaaccgtagcatctccttcttcggcttcagtttcctctacagcgtcaaggtat
agaaaaacttcattgcaaaagactccagttcccagaggtggcattgcaacggcaaagaac
cctaaagatgctgctgcaagcccaaaacctgtgaaagaatctggaaatgtctatgatgat
aagttggtagagatgataaacacaacaatagtggatagaagcccgtctgtgaagtgggat
gatgtcgctggacttgatggagctaaacaagctttattggagatggttattttaccagca
aaacgaagggatttattcactggtctccgaagaccagcgagaggtctgcttctctttgga
ccacctggaaatggaaaaacaatgcttgccaaggcagtcgcttccgagtcacaagcaaca
ttcttcaacgtctcagcgtcttctttgacgtcaaaatgggtgggtgaggctgaaaagcta
gttaaaacgctgtttcaagttgcaatatccagacaaccgtctgttatatttatggatgaa
atagatagtataatgtcaacaaggtcgatcagtgagaatgaagcaagtagaaggttgaaa
tcagaattccttatccagtttgacggtgtgacttctaatcctgatgatttggtgattgtc
attggagctactaacaagccacaggagttggatgatgcagtgctcaggagattggtgaag
agaatatatgtaccattgccggattcaaacgtcagaaaactactttttaaaactaaatta
aagtgccagcctcactctttatccaatgacgacattgataaaatcgtcaaagaaaccgaa
ggatactcaggaagtgatcttcaagcattgtgtgaagaagctgcaatgatgccaatcaga
gaactcggtgcagatattcttaccgtccaagcaaataaagtaagacctctacgatatgat
gattttcggaaatcgatggcagtgatcagacccagcttgagtaaaagcaaatgggaagag
cttgaacgttggaactcagagtttggctctaattga
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