Arabidopsis lyrata (lyrate rockcress): 9318142
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Entry
9318142 CDS
T01578
Name
(RefSeq) uncharacterized protein LOC9318142 isoform X1
KO
K24155
rabconnectin-3a
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
9318142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9318142
Membrane trafficking [BR:
aly04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
9318142
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
9318142
RAVE complex
9318142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
Beta-prop_WDR5
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
ANAPC4_WD40
WD40_CDC20-Fz
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
9318142
NCBI-ProteinID:
XP_020882699
LinkDB
All DBs
Position
Unknown
AA seq
2484 aa
AA seq
DB search
MPATSHDAISPVTDPIDNLPLRQIRSEIVPPAPNRSQSSIDWLPDFAGYSWLAYGASTLL
VISHLPSPLRGEDSTNGPFFRQILEVSGDVSSPVTSVSWSPVTPSVGELAVGSGNYIFLF
ARDSSALNGSFCWSQNAILVQETKVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKF
SGDHLQDLVSSTWSFEGPFATATSWRKLPDECGEAGKSVLAYYSDGESYHKFELPHPQRI
SMIQWRPMAAEQSAIGIGKSMRNLLMTCCLDGAVRLWSEVDGGKTKKGMKDVPDHKKSFC
VAAVIEINQVLDGCLGRDLFLFWGTRTGGILKTTEGTNQFFSMEKYDHENVGKCEWLVGY
GPGNLATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAVSLSLADATGSSDRLPLKKVSV
LRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLNGH
GGKILQVAFDPFIGEAGYTASLDSNGLIIIWSSSTYLNRAIDHPISVASWKPCGWLQNQE
FRLKYTSLCWAPSSLKDERFLLVGHAGGVDCFSVRNCGKGDDGYLTHYICTIPSAVNSPL
QSGPTSIFARPLSNSCGKTFKSNRFLLLSVWMKEKQFDALSWSVTLHHFDTAGSTCVCHF
HDFDSTGLGKWLFEDTFAGKKNCIAIRSCSSEIPESHRDDEVTSFAVVNPSGRAIENVMN
SESQAYTMATGQADGSLKIWRSSFQESSTPCVPWELVGMLTIGQNPVSAIFLTDSGHKIA
ALCTENHSKATCTISIWEIIHLIDSGVFILEDKLHVDAEVVAVRWSIASNDQLLLGVCTQ
KELRVYGIARQSCKSTSFAVSDYSSEAQIWQCFAVTHTFSAICDLWWGPKAMTCLVHNDY
ISLHGQWLAVVDKKQKIDNYPEIFAANLPNLVNATEEGRGSELLSDSGTNDIKEADTAYI
SRGCIPLPSTSNAIDDGQVNSMSLIGTAYGSDTINEIMSMGHMVEKLGGALPLYHPQALL
VAIHSGNWKRASAALRHLSEYITSSDASEKVYTVKSVLCPDILLSKYYEGSLSTGPNPKD
FQWGGTSGSSFNMESYSPNSSHSSPATDLEFSGFCEQLKKLSDGGNISRIEKLQYFAIAD
LLCEISNPHSTSVYASLDEAGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFH
SESQENLSGSLLPNEASWQQMRSLGFGFWYSNVAQLRSRMEKLARQQYLKNKNPKDCALL
YIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIG
FFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWL
ASLLKWELGEYHQSIFAMAGCLGNPVTESSTVSSNHISFVDPSIGLYCLMLATKNNVKNA
VGEKIASTLSRWATLMAATAFSRCGLPLEALECLSASASGHGGTHQTSDPSNGQLRTPKG
VFDHSVPHSSNWVSSGVSSAVDTHFRLGLAVQFLSRILREATAPLMNSEIVSCEKISRFQ
HELETALEQFYQRFSLSSSYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDED
IFQYSALSKLILKATEEKSFVLSRIIATCSVTCLHSVPWFEENKVSSGPEPKWSNALRFY
FQGILESFSNLRTSLRLCLSSSVEDLKTRLAVVFDLVEYCSRLAIAWVLGDVNCLFRMVQ
PLVIAYFHGHIPYEVDLESVKRVYHQEASASVPDASDVGVNSKVSRDVENYEVGYPVYSI
PEDERCLVTQACFWKHVSDFVKHKLGSISINLDDGISNNGSPENFDAQTSLDSSDDIVCV
TEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKPKLEKKIQVPTLLWLLECRGSQANFLKR
DIPDAGIENENNGDPVVSVRFWKLCVDPHLLYEAFLLENFDIFEWSKSKPLEYWSDMYRE
VTRKNELHVPCNQDGRSSNEVASLASHASNSSQKAAITANENSAFQNPKEIHKRTGELIE
ALCINAINHRLAALASNRKGIIFFNLEDVDSCKNQSDYIWSDADWPHNGWANSESTPVPT
CVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKAHRVPGYSGLGVSGLGWETQEEFEEFV
DPPPTVETVITRAFSNHPTMPLFLVGSSNTHIYLWEFGKDRATATYGVLPAANVPPPYAL
ASISAVQFGPCGHRFASAALDGTVCTWQSEVGERSNIHPVESSLCFNGHASDVEYISSSG
SIVAASGYSSSGTNVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTG
GKNGDIGLHDFRYIATGKMKKQRNPDGRSSTDGDQNKNGMLWYIPKAHLGSVTKIATIPR
TSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQYCPN
GFITCGGDGTVKFVSLRDPCEDGK
NT seq
7455 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgacgagtcacgacgcgatctcaccggtcacagatccgatcgataatttgcct
ctccggcaaatcagatcggagatcgttcctccagctccgaatcgatcccaatcttctatt
gactggcttcccgacttcgccggttactcatggcttgcttatggagcatccactctcctc
gtcatctctcatctaccttctcctctccgcggcgaagattccacgaacggaccatttttc
cgtcagattctagaggtttccggcgatgtttcgtctccagttacttccgtttcctggtct
cctgtaacgccgtcagtaggcgagctcgcggttgggtctgggaactatatcttcctcttc
gcgcgtgattccagtgctttgaatggttctttttgttggagtcagaatgccatactggtg
caagagacaaaagttgaggcgattgagtggacaggatccggggatgggataatagttggt
ggaactgatattgttctgtggaagagaaggaaccaatcttgggaaatagcttggaagttc
tcgggggatcaccttcaagatctggtatcctccacctggtcatttgagggtccttttgcc
acagcaacttcttggaggaagcttccagatgagtgtggcgaggcaggtaaaagtgtcttg
gcctattatagtgatggggaatcatatcataaatttgaattgccacatcctcagagaata
tccatgattcagtggagaccgatggctgcagaacagtctgcaataggtatagggaaatca
atgaggaatctgttaatgacatgttgcttggatggggcagtaaggttatggagtgaggta
gatggtggaaagacaaaaaagggcatgaaagatgtacctgatcataaaaaatcgttttgt
gtggcagctgtgatagagataaatcaggtcttggatggctgtttgggtagagatttattt
cttttttggggaactcgtacaggaggtatattgaaaaccaccgaaggtactaatcaattt
ttttctatggaaaagtatgatcatgagaatgttggaaaatgtgagtggttggtagggtat
ggccctggaaatttggctactttgtgggctgtccattgtcttgatgacatctctcctatg
aggtttccacgagtaacattgtgggcgaaacaagaatcaaatgaaattggtgcagtatca
ctctctctagcggatgctacaggttcttctgatcgattaccccttaagaaagtttctgta
ttgagaaataacctttatggcacaccacttatctgctcgtcgatttatttatctccgcag
aatactgtatattggtcttccttgcacacaataaaatcacatgactcagaagattcatct
ccaaataaatccagtttattgaagtgcattgatggaaaagtattatatctaaatggtcat
ggtgggaaaatcctacaggttgcctttgatcctttcataggtgaggcgggatacactgct
tccctggattctaatggtttgataataatctggtcctctagtacttatttgaaccgtgct
attgaccatcctatatcagttgcctcttggaaaccttgtggatggctacaaaatcaagag
ttcagattaaagtacacaagtttatgctgggcaccttcttcattgaaagatgagagattt
ctacttgtaggacatgcaggaggcgttgattgctttagtgtaaggaattgtgggaaaggt
gatgatggttatctaacccattacatttgtaccataccgtctgcagttaacagccccttg
cagagtggtccaaccagcatatttgcaagacctctgtctaattcttgtggaaagacattc
aaaagtaacagatttttgcttctgagtgtatggatgaaagagaaacagtttgatgctctg
tcatggagtgtgaccttgcatcattttgatactgcaggaagcacctgcgtttgtcatttt
catgattttgatagtactggattgggaaagtggttattcgaagatacttttgctggtaag
aagaattgcattgctattaggtcatgctcttcagaaatacctgaatctcaccgtgacgat
gaagttacgagttttgctgtggtcaatccaagtggcagggctatagagaatgtcatgaac
agtgaaagtcaagcttatactatggcaactggtcaggctgatggctctttaaaaatttgg
agaagtagttttcaggaaagttcaacaccttgcgttccgtgggagctagttggcatgctt
accattggccaaaatcctgtcagtgctatatttctgactgattcgggacataagatagca
gccctctgtacagagaatcattcaaaagctacctgcacaattagcatatgggagattata
caccttatagattcaggggttttcatactagaggataagttacatgttgatgcagaggtt
gttgctgtaagatggtcaattgcgagtaatgatcagctattgcttggagtttgcacacag
aaggagctgcgggtgtatggtattgctcggcagtcctgcaaaagtaccagtttcgcggtc
tctgattattcttcagaggcacagatttggcaatgcttcgctgttactcatacattttct
gctatatgtgatttatggtggggacccaaagccatgacttgtcttgttcataacgattat
attagtctacatggtcaatggctggctgttgttgataagaaacaaaagatcgataactat
ccagaaatttttgcagccaatcttcccaacctagtaaatgctacagaagaaggcagaggc
tctgaattgttatctgactctggtactaatgatatcaaagaagctgatactgcatatatt
agcagaggatgtattcctctaccttcaactagtaatgcaattgatgacgggcaagtcaat
agtatgtcattgattgggaccgcatatggttcagatactattaatgaaattatgagcatg
ggacatatggtggagaagttaggaggtgctttaccactttatcaccctcaagccctcctt
gtagctatacattcaggcaattggaaacgagcaagcgcagctctaagacatctttctgaa
tatattacttcaagtgatgcctccgagaaggtatatactgtaaagtcagttctttgtcca
gatatccttttgtcaaaatattatgaagggtctctctccactggtccaaatcctaaggat
ttccaatggggtgggacatctggttcaagttttaatatggaatcgtatagtcccaatagt
agtcacagttcacctgcaacagacttggaatttagtggcttctgcgagcagctcaagaag
ttatcagatggaggaaatatttccaggatagaaaaattgcaatattttgcaattgctgac
cttctttgtgaaattagtaacccacattctacttctgtctatgcaagtcttgatgaagct
gggagaagattttgggtcacacttaggtttaaacagctattcttagctcgaagttctggg
aaaacagcatctctagaagagctggatattgactctagtatgataggatgggcttttcac
tcagagtctcaagaaaatttgtctggttctcttttacccaatgaagcatcatggcaacaa
atgcgatcactgggttttggattttggtattcaaatgtagcacaattgcgttcacggatg
gagaaactggcccgacagcagtacctgaagaacaagaatcctaaagattgtgcgcttctc
tatatagctttaaatagagttcaagttttggctggtcttttcaaattaagcaaggatgag
aaagataaacccttggtggtttttctttcacgcaattttcaggaagagaaaaataaggca
gcagccttgaaaaatgcatatgtgctaatgggtaaacaccaactggagttggctataggt
ttctttctccttggaggtgaagcttcatctgcaataaatgtttgtgtgaaaaatcttcag
gatgagcagcttgcgctcgtaatttgccggcttattgatgggcagggtggggccctggaa
agtaatcttataaagaaatatatactcccatctgctgttcagagaggagacttttggcta
gcaagccttcttaagtgggaattaggagagtaccaccagtcaatttttgctatggctgga
tgtctagggaaccctgttactgagagctctactgtttcttcaaatcacatctcttttgtg
gatcctagtattggcctatactgcctcatgttggcaaccaaaaataatgtgaagaacgca
gtgggggaaaaaattgcttcaactcttagtagatgggcaaccttaatggctgctactgcc
ttcagcagatgtgggctcccgctcgaggcgttagaatgtctttcagcatctgccagcggt
catggtggtacccatcagactagcgatccaagtaatggtcagttgcgtactcctaaaggt
gtttttgatcattctgttcctcattcatcgaattgggtatcaagcggtgtttcatctgct
gtggacactcattttagactgggtttagccgtccagtttctctcaaggatcttacgggaa
gcaactgcacccttaatgaattctgaaattgtttcgtgtgagaaaatttcacgatttcaa
catgagctagaaacagcgttggagcaattttaccagagattttcgctgtcttcatcttac
ctacgtaatatgatgattctgtcagcatacaaccgagggttactatccatgggacacaat
atatttcaggaaaatagttcctcaggactctcagacgacaagtctcacacagatgaagat
atcttccagtattcagctttgtctaaattgattctaaaagcgactgaagagaaatcattt
gtattatcacgtatcattgctacatgcagtgtcacttgcttacactcagtgccatggttt
gaggaaaacaaggtgtcatctggacctgaaccaaagtggtccaatgctttgcgattttac
tttcagggaattctggaatcgttctctaatttaagaacttctttaaggttgtgcttgagc
tcctctgtggaagacctgaaaacaagactggcagttgtttttgatttagtggaatattgt
tcgagactcgcaattgcttgggttctgggagatgtaaattgtctctttcgaatggttcag
ccccttgtgatagcatattttcatgggcatataccttatgaggttgacctggaaagtgtg
aagagagtataccaccaggaagcttctgctagtgtaccagatgcatcagatgtaggagtt
aattctaaggtcagtagagatgttgagaattacgaagttggctatccagtgtactcaatt
ccagaagatgaaagatgtcttgtaacacaagcatgtttctggaagcacgtttcagacttt
gtgaaacataagctaggatctatttcgatcaatctagatgatggtatttcgaataatggt
tcccctgaaaattttgatgctcagacatcattggactccagtgatgacattgtatgcgta
acggagaagataatgtctgttctgggaaaaacactgattagtaccctagctcaactctct
tcataccatgtaaaacaactagtattggtcttgaaaccgaaactagagaagaaaattcag
gttcctaccttgttatggctgctcgaatgtcggggatctcaagcaaattttcttaaacgg
gatatcccagatgcaggtatagaaaatgaaaacaacggtgaccctgtggtttctgtgagg
ttctggaagctttgtgttgatcctcatttactatacgaagctttcttgctagaaaatttt
gacatatttgaatggtcaaaatctaaaccattggaatattggagcgatatgtacagagaa
gtaaccaggaagaatgagctccatgtgccatgcaatcaagatggtcgaagtagtaatgag
gtggcatcacttgcaagccacgcttcaaattcttcacagaaagctgcgataactgccaat
gagaactctgctttccagaaccctaaagaaatccataagaggaccggggagcttatagag
gccctttgtatcaacgccatcaaccatcggctagctgcattagctagcaaccgcaagggt
ataattttctttaacctagaagatgttgattcctgcaaaaatcagtcagactatatctgg
tcagatgctgactggccacataatggttgggctaactctgagtcaactcccgttccaaca
tgtgtctcactcggtgttggtcttggggataagaaaggagcacatcttgggttaggtggg
gccactgttggagttgtttctctttccaagcctgggaaagctcacagagttccgggctac
tccgggttaggagtctctggtctaggttgggaaactcaagaagaatttgaagagtttgtt
gatcctcccccaacagttgaaactgttattacgagagcattctctaatcacccaacaatg
cccctcttcttggttggctcaagcaacactcacatatacttgtgggagtttggaaaagac
agagctactgcaacttatggtgttctgcctgctgcaaatgttcctcctccatatgctttg
gcgtcaatatcagcagtgcaatttggtccatgcggacacagatttgctagcgctgcactg
gatggaactgtatgcacttggcaatcagaagttggggaaagaagcaatatccatcctgtt
gaatcatctctttgcttcaatggccatgcatcagatgtagaatatattagttcgagtgga
tccattgttgcagcttcaggatatagctcaagtggtacaaacgtagttgtgtgggatact
ctagctcccccttcaacctcccaggcatctatcaattgtcatgaaggtggtgcacgctct
atctcagtattcgataatgacattggtagtggctcaatttctcctatgattgtgactggt
ggcaaaaatggtgatatcggtctgcacgatttccggtatattgcaaccggaaagatgaag
aagcaaaggaaccctgacggaagatcttcaactgatggcgatcaaaacaagaatgggatg
ctttggtatataccaaaggctcacttagggagtgtgacgaaaatagcgacaatcccacgc
acaagtctgttcttgacgggaagcaaagacggagaagtaaaactttgggatgcgaaagca
gcaaagttgattcatcactggcctaaactacacgaaagacacacttttctgcagccaaac
tctagaggctacggtggaataatccgggctggggtgactgacatacaatattgtccgaat
ggatttataacgtgtggtggtgatggcacggtgaagttcgtcagccttagagatccctgt
gaagatggtaaataa
DBGET
integrated database retrieval system
