Arabidopsis lyrata (lyrate rockcress): 9318242
Help
Entry
9318242 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9318242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9318242
03009 Ribosome biogenesis [BR:
aly03009
]
9318242
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9318242
Spliceosome [BR:
aly03041
]
Complex A
U1 snRNP components
U1 related factors
9318242
Complex B
9318242
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Helicases
9318242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
9318242
NCBI-ProteinID:
XP_020886217
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MAATTAAPSVVRYAPEDHSLPKPWKGLVDDRTGYLYFWNPETNVTQYEKPTAAQPPKFPA
VSLSSSVQVQQTDAYAPAKDDNKYTRATEHGPKIESASRFTEGGRSGPPYSNGAANGVGN
SAYGPASARGPPRSSAPGNELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPSELLREVL
NAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTIL
VLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDI
LEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAA
DLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKR
MCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV
VNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIRE
MATRGGGGMNKFSRWGPPSGGRGRGGDSGYGGRGSFVSRDSRSSNGWGRERERSRSPERF
NRAPPPSSTGSPPRSFHETMMMKHR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaccaccgctgctccttctgttgtccgttacgcacctgaggatcattctctt
cccaagccctggaaaggccttgtcgatgatagaactggttacttgtacttttggaatcct
gagaccaatgttactcagtacgagaaacctaccgccgctcagcctcccaagtttcctgcc
gtttctcttagctcttccgttcaggttcaacaaactgatgcctatgctcctgccaaggat
gataataagtacaccagagccactgaacatgggcctaagattgagtctgcctcgaggttt
actgagggtggcagaagtggaccgccatattcaaacggtgctgctaatggagttgggaat
tctgcttatggtccagcatctgccagaggtcctcctcgctcatcagctccaggaaatgaa
ctgtcccctgaggcctattcccgccgtcatgaaattactgtcagtgggggccaagtacca
ccacctctaatgtcctttgaagctactggttttccttctgagcttctgcgggaggtactc
aatgcaggtttctctgctcctactccgattcaagctcagtcatggccaattgcgatgcaa
gggagggacatagttgccattgctaaaactggctcgggaaaaactttgggttacttgatt
cctggatttctgcatcttcaacgcatcagaaatgattcgcgaatgggcccaacaatcttg
gtattgtctccaacgagggagctggccacacaaatccaagaagaagctgttaaatttggg
aggtcatcaagaatttcgtgcacgtgtttgtatggtggtgcaccaaagggccctcagctg
agggatttagaaagaggagcagatatcgtggttgcaactcctgggcgattgaatgatatc
cttgaaatgaggaggataagtctgcgtcaaatatcttatcttgtgctagatgaggcagat
cgaatgttggacatgggttttgaaccacagataaggaagattgtgaaagaaattcccacg
aagcgtcaaacccttatgtacacagctacatggccaaagggagttaggaaaattgcagct
gacttacttgttaaccctgctcaagtcaacattgggaatgttgacgagcttgtggctaac
aagtcaataacacagcatattgaagtggtagcaccaatggagaaacagaggaggttagag
cagatcttgcggtctcaggaaccaggctcaaaggtgataatattctgctcaaccaaaagg
atgtgtgatcaactaacccgcaatctaacccgccaatttggagctgctgctatacatggg
gacaagtcacagcctgagagagacaatgttcttaatcaattccgcagtggcaggactccg
gttcttgtagcaaccgatgttgctgctcgtgggctggacgttaaggacatcagggctgtc
gtaaattatgatttccccaatggagtggaagactatgttcatagaataggaagaacagga
agagctggagcgactggtcaggcattcacattctttggtgatcaagattcgaaacatgct
tcggatctgatcaagattttggaaggagcaaaccagcgagttcctcctcagatccgcgaa
atggctacccgtggtggtggtggaatgaacaaattcagtcgttggggtcctccttccgga
ggccgtggtcgtggtggcgactctggttatggtggcagaggtagctttgtttcgcgtgac
agtagaagcagtaatggatggggaagagagcgtgaaagaagccgtagccccgagagattc
aacagagctccaccaccgtcttccacgggatctcctcctcgcagcttccacgagacgatg
atgatgaaacacagatga
DBGET
integrated database retrieval system
