Arabidopsis lyrata (lyrate rockcress): 9318545
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Entry
9318545 CDS
T01578
Name
(RefSeq) uncharacterized protein At3g06530 isoform X1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9318545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9318545
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
9318545
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ARM_At3g06530
HEAT_HEATR1
BP28CT
U3snoRNP10
Motif
Other DBs
NCBI-GeneID:
9318545
NCBI-ProteinID:
XP_020886771
LinkDB
All DBs
Position
Unknown
AA seq
2216 aa
AA seq
DB search
MSSSIVSQLQALKSVLQADTEPSKRPFTRPSILFSPKEAADFDIESIYELGLKGLEVLGN
KDERFKNYMNDLFSHKSREVDRELLGKEENARIDASISSYLRLLSGYLQFRASLETLEYL
IRRYKIHIYNVEDVVLCALPYHDTHAFVRIVQLLSTGNSKWKFLDGVKNSGAPPPRSVIV
QQCIRDLEVLETLCDYASRTKKYQPSKPVVSFSTAVVVGVLGSVPTVDGDIVKRILPFVD
SGLQSGVKGCLDQQAGALMVVGMLANRAMLNSNLIKRFMRSIIDTAREHAKESSDPHSLR
LSFMALINFVQLQSVDLIPRKALDLLNEIRGISGVLLGLSKEFNIKRFLAVLLDSLLLYS
SSDDQCCEALASIIEAVPVNNLVDHLISKVFSLCMTQYQKNSDFRSSTSGSWAKKILVVV
SKKYPVELREAVSKFLEATEGQSKKEDLKLEMLSCMLDGNSDMSNPFVDSKLWFRLHHPR
AAVRCAALSSLNGVLKDDSSKAENLVTIQDAILRQLWDDDLAVVQAALSFDKLPNIVTSS
GLLDALLHVVKRCVGILLSGVSHNVQLANDVVALSLKIAVSSFSNQADSTEKVTSAMFPF
LLIQPKTWNLNLHVLKLGKDVNWPLFKNLGTDAEMKKLPDIMSTNLSSISMDIINNLGEA
LSLDPDERRIELIESACNFKLSEVVKTCSNIKLTEQERNKLQKGLLIRESVSTLNMDIIN
KLMDAFMMHPADYIQWLTVSCRDFTLSKTLFYMLLMHSLQKMNSSSDPSQFLDLFELCFP
VLKTEWEELEVELDVSLKELLKSNCQELLYQLLDTSDFTALNSKLLICLFWKLGESFIKL
EPAQDTSVGDAQHDLVFNKRLCSGLEDLFFFFATTRSRHVFKEHLHYRVREAKVCPVLFL
SRLISREDVPPGVQIESLKCFSYLCSCGNNEWLNRIFSSFPVLLVPMSSANQDLKVAAMN
CIEALFNLRCRVDFSKKNGSAAICGSSFDELLGMIVQQRRLILSDNKFLPSYLTSLLSST
SNDLLVPVDLQKRFDQSTKENILSVILLCVKDLPAYGKLRVLSLLKDLGIMLLRDEIVKL
LSQLLDKRSQDYLKLDKTLQPMSDTEVDLLCLLLECSMMRSASFKGQSLDDYILSALKVD
CMASERSAIISPCLTILEKLSNQFYVGLKSEVQIRFFHILVSMFRSSNGSIQNGAKEAVL
RLKISSSTVVHALDHIIQQDTLVIGSLSKKKKQKKSSKSSPEEDVNSGEFLSGEKALSFI
AALLDMLLLKKDLAHRESLVRPLFKLLERSMSKEWVKIASSVEETSVQPPQDVRETTPAS
ISSIQQTLLLILKDIFDSLNMNPLKAEIANEINVKMLVELAHSSNDGVTRNHIFSLFTAI
VKFVPDRVLDHIISILTLVGESTVTQIDSHSKSIFEGFISVVIPFWLSKTKSEEQLLLIF
VKVLPDIVQHRRRSIVAYLLGVIGERNGLPTLLVLLFQSLISRKGSAWLGNAKASECLAS
VVKREWEYAFAVEICEQYSSSTWLSSLVMLLQTISQDSKQCFLQMRIVLEFIFQKLQDPE
FAFAVSLEPRNNVSVGIQQELQELMKGCISLLQAVDAKMEKDVTFAVRNEIRMRIHDVLM
TVTGAMDLSIYFRVVTSLLQQQLDRNGTKKVLGLISERAKDTSSSKLKHKRKISNQKARN
PWLHLDEVAVDSFGKMCEEIVHLIDETDDESGVPAKRAAISTLEVLAGRFPSGHPIFSKC
LASVAEGISSKNLGISSSCLRTTGALINVIGPKALVELPRIMKNLVKQSSEVSSASKSAG
NTTAEEQLLMLSVLVTLEAVIDKLGGFLNPHLGDIMKVMVLHPEYVSDFDKNLKSKANTI
RRLLTDKIPVRLTLQPLLRIYDEAVSSGNASLVIAFDMLENLVVKMDRSSIVSNHGKIFD
QCLVALDIRRQNPAAIQNIDEAERSVTNAMVALTKKLTESEFRPLFIRSIDWAESDIVDG
SGSENKNIDRAISFYGLVNRLCESHRSIFVPYFKYVLDGIVSHLTSAEASVSTRKKKKAK
IQETSDSISPKSWHLRALVISSLKNCFLHDTGSLKFLDTNNFQVLLKPIVSQLVVEPPSS
LKEHQHVPSVDEVDELLVSCIGQMAVASGSDLLWKPLNHEVLMQTRSENLRSRILSLRSV
KQMLDNLKEEYLVLLAETIPFLGELLEDVELSVKSLAQDIIKQMEEMSGESLTQYL
NT seq
6651 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttctatagtgtcacagttacaggctctcaagtcagtgttacaagccgataca
gagccttcgaagagacccttcacacgcccttcaattctcttcagtcctaaagaagcagct
gatttcgatattgaatccatctacgagctcgggctcaaaggtctagaagtacttggaaac
aaagatgagaggtttaagaattacatgaacgacttgtttagtcataaaagtagagaagtt
gatagggaattgctgggtaaagaagaaaatgctcggattgatgcatcaatcagttcgtat
ctacgtttactctcgggctatcttcaattccgtgcttctttggagacccttgagtatctt
atacgaagatacaagattcatatatacaacgtagaagatgtggttctatgcgctttgcca
taccacgacacacatgcctttgtccgcattgttcagctactttcaactggcaatagcaag
tggaaatttctggatggtgttaaaaattcaggtgctccacctcctagatcggttatcgtt
cagcaatgtatacgtgatctggaagttttggagaccttgtgtgactatgcatctcggact
aagaagtatcagccttcaaaacctgtggttagcttctccacagcagttgttgttggggtt
ctaggttcagttccaactgttgatggagatattgtaaagaggattttgccatttgtggac
tctggtcttcaatccggtgtgaaaggatgtttagatcaacaggctggagcgttaatggtt
gttggcatgttggcaaacagagccatgctcaatagtaatcttatcaagcggtttatgagg
tccatcattgacactgctcgtgaacatgccaaagaatcttctgacccccattcacttcgg
ttgtcatttatggcattgataaattttgttcagttgcaatctgtggacttgatcccaagg
aaagcattggatcttctcaacgaaataagaggtatttctggtgttcttttgggcttgtcc
aaagagttcaacatcaaaagattcctggcagtgctactggattccttacttctttacagt
tcgtctgatgatcaatgctgcgaagctttagcttcaataattgaggctgttccagtaaac
aatttggttgatcatttgatctccaaggttttctctttatgtatgacacaataccagaag
aacagtgattttagatcttctacatctgggagctgggccaagaaaattctggttgttgta
agcaagaagtatcctgttgaactacgtgaagcggtttcgaaatttctagaggctactgaa
ggtcagtcgaagaaagaggatttaaagctagagatgttgtcttgtatgctggatgggaat
tcagacatgtccaatccgtttgtggattcaaaattgtggttccggctccaccatcccagg
gctgctgtacgttgtgccgcgctgtctagtctaaatggtgttctcaaggatgatagctct
aaagcagagaaccttgtcacaattcaggatgctatactgcgtcagctttgggatgatgat
ctggctgttgttcaggctgccctgtcctttgataagttgcccaatatagtaacctcttct
ggtcttctggatgctttgcttcatgtggtgaaacgatgtgttggcattctcctatcagga
gtatcacataatgttcaactggcaaatgatgttgttgctttgtctcttaaaattgctgtc
tcaagcttctctaatcaagcagactctactgagaaagttacctccgcaatgttcccattt
ctcttaattcaaccgaagacgtggaatttaaatctacatgtgctaaagttggggaaggat
gttaactggccacttttcaagaatcttggtactgatgctgagatgaaaaagctcccagat
atcatgtctacaaacttatcctcgattagcatggatattataaacaatttgggggaagca
ctttccttggatcctgatgagcgtaggattgagcttattgagagtgcctgcaactttaag
ctctctgaagtcgtgaaaacatgcagcaatatcaaattgacagaacaggaacgtaacaag
ttgcagaagggactactgatccgtgaaagtgtgtccacattgaacatggatatcattaac
aagctgatggacgcatttatgatgcaccctgctgattatattcagtggcttactgtcagt
tgccgagatttcaccttgtcaaagacacttttttatatgctgttgatgcattcactgcag
aagatgaattcttcatctgaccctagtcaatttttggatctctttgaactttgctttccc
gttttgaagactgagtgggaagaacttgaggtcgaactcgatgtttctctgaaagagcta
ttgaaaagcaattgccaagaactcctatatcaacttcttgacacctctgattttactgct
ctgaattcaaagcttttgatctgcttgttttggaagttgggcgaatcattcattaaactt
gaacccgcccaagatacttcggtgggtgatgctcaacatgatctggtttttaacaaaagg
ttgtgtagcggacttgaggacttgtttttcttttttgcaacaactcggtcacggcatgtc
ttcaaggaacaccttcattaccgtgtgagagaagccaaagtctgtcccgttttgtttcta
tcccgactgatctcacgagaagatgttcctcctggtgtccaaattgaaagtctcaaatgt
ttttcgtatctttgctcttgcgggaataatgaatggttgaatcgaattttctcaagcttt
cctgtacttttggttcccatgtcgagtgctaatcaggaccttaaagtagctgccatgaat
tgtattgaggcactcttcaatcttcggtgtcgtgtcgactttagcaaaaaaaatgggagt
gctgcaatctgtggtagttcttttgatgaacttttgggaatgatcgtgcaacaaaggagg
cttatattgtcggacaataagtttctcccatcctacttgacatcgttgctcagttcaacc
agtaatgaccttctagtgccagttgacctgcaaaaaaggtttgatcaatccacaaaagaa
aacattctttcggtcattttattgtgtgtgaaagatttaccagcttatgggaagctaagg
gtcctatctttgctaaaagatctgggcatcatgctcctgcgtgatgaaattgttaagtta
ttgtctcaacttctcgataaacgtagtcaagactacttaaaactggacaaaactctccag
ccaatgtcagacactgaggtcgatttattatgccttcttctggagtgctccatgatgcgt
tcagcatcgtttaaagggcagtctctggatgattatatactgagcgcattgaaagtggat
tgtatggcatcagaacgttctgctattatttctccttgtcttaccattttggagaagcta
agcaatcaattttatgttggactgaagagtgaggttcagattcgtttcttccatatactg
gtgtctatgtttcgaagttcaaatggcagtatacaaaatggtgccaaagaagctgtctta
cgcctgaagatttcttcttcaacggtggtccatgctcttgatcatatcattcagcaggat
actcttgttattggttctttgagcaagaagaagaaacagaagaaaagttcaaagtcatct
ccagaagaagacgtaaatagcggggaatttctaagcggagaaaaggctctctctttcatt
gccgcgttacttgacatgctgcttctaaagaaagatctagctcacagggagtccctcgta
aggcccttgtttaagctcctagaaagatccatgtctaaagaatgggtaaaaattgcttct
tccgttgaggaaacatcagtccaacctccacaggatgttcgtgaaacaactcctgcctct
atttcttccatccaacagacattgctcttaatcctgaaagatatttttgattctctaaat
atgaatcctttgaaggctgaaatagcaaatgaaatcaatgtcaaaatgctggttgagttg
gctcattcatcaaatgatggagtcacacggaaccatatcttctccttgttcactgcaatt
gttaaatttgtccctgatagagttttggaccatattatcagcatacttacacttgttggt
gaatcaactgtgacacagattgatagccactcgaagtctatctttgaggggtttatatca
gtggtcattccattttggctgtccaagactaagagtgaggagcagttgctgctgattttt
gtgaaagtgttacctgatattgttcagcatagaaggcgttcaattgtagcttacttactg
ggagttatcggtgaacgaaatggcttgcctactttgcttgtcctcttattccagtctttg
atttcaaggaaagggtcagcttggcttggtaatgccaaggcttctgaatgtcttgcttct
gttgttaagagagaatgggagtatgcttttgccgtggaaatatgtgaacaatattcttct
tcaacatggctctcatctctggtcatgcttcttcaaactatcagccaagacagcaaacag
tgtttcttacagatgcggattgtcttagaatttatattccagaagttgcaagacccggaa
tttgcatttgcagtgtcacttgaaccaagaaataatgtttctgttggcatccagcaagaa
ctacaggagcttatgaagggttgtatatctctcctgcaagctgttgatgcgaaaatggag
aaagatgtgacttttgcagttagaaatgaaatcagaatgcgtatacatgatgtcttaatg
actgtcacgggagccatggatctgtctatatatttcagggttgttactagcttgcttcag
cagcagttggatcgtaatgggacgaaaaaggtacttggacttataagtgagagagctaag
gacacctcttcttctaaactgaaacacaagaggaagatttccaatcaaaaagcaagaaat
ccttggttgcatttggatgaggttgctgttgattctttcgggaagatgtgtgaggagatt
gtccatctaattgatgagacagatgatgagtcaggtgttccagctaaacgagcggccatt
tctacactggaagttttggctggcaggtttccgtctgggcacccaatattcagcaaatgc
cttgcatctgttgcagaaggcatcagctcaaagaatttgggaatatcgtcaagttgtctt
cgcacaactggtgcactgatcaatgttattggacctaaggcgcttgttgaacttccacgc
ataatgaagaatttggtaaaacaatcgagtgaagtatcatctgcatccaagagtgctgga
aacacaacagctgaagagcagttacttatgctgtctgttctagtcactttggaagcagtg
attgataaacttggaggtttccttaatcctcatcttggagatattatgaaagtcatggtg
ctgcatcctgaatatgtttctgacttcgacaagaatctcaagtccaaagccaatacaatt
aggaggctccttactgataagatacctgttcgtcttactctgcaacctcttctacgaata
tacgacgaggctgttagttctgggaatgcaagcttagtgattgcttttgatatgttagaa
aatctagtcgtgaaaatggatagatcatctatcgttagcaaccatggaaagatttttgat
caatgcttagtcgccctcgatattcgacgtcaaaatccagcagctattcagaacattgat
gaagctgagagaagtgtaactaacgcaatggttgctctcacaaagaagctaactgagtcc
gagttcagacctctctttattaggagtattgattgggcagagtccgatattgtagacgga
tctgggagtgaaaacaagaacatcgaccgagctatatctttctatggtctggtgaataga
ctctgtgagagtcacaggtccatctttgtaccatatttcaaatacgtgctcgatggtatt
gtatcacatctcactagtgctgaagcttcggtttcaaccaggaagaaaaagaaggccaaa
attcaggaaacgtctgactctatatcaccaaaaagctggcatcttagggcactggtgatt
tcttccttgaagaattgttttctgcatgataccggcagcttgaagtttctggatacaaat
aacttccaggtgctacttaagcctattgtatcacagcttgttgttgaacctccatcttct
ttaaaggagcatcaacatgtaccatctgtggatgaggttgacgaattattggtttcatgc
attggtcaaatggcagtagcctcaggctctgacctcctctggaaaccgctgaaccatgag
gtgctaatgcaaacgaggagtgagaatctacggtcaaggatattgagtttgagaagtgtg
aaacagatgctggataatctgaaagaagagtatcttgtgttgcttgctgaaaccattcca
ttcttaggtgagctactcgaagacgtcgagctatctgttaaatctttggctcaagatatt
atcaaacagatggaagagatgagcggtgaaagtctgacgcaatacctctga
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integrated database retrieval system
