Arabidopsis lyrata (lyrate rockcress): 9318696
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Entry
9318696 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 45
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9318696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9318696
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9318696
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 related factors
9318696
Complex B
9318696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
9318696
NCBI-ProteinID:
XP_020885878
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
MEKDNILKKNRRDRDRSKERRKEPRTIRCEKVKRSDFEKREDSEEREKLKEKEKMRRRRD
RKSRDFDEEDERDKRRGEEKGRGQREHEIDRGNDRKRDRERREHEKERIKDEDDNGEKKI
REEEVDDEELYKRRRRVQEWQKLKRQKEESESESKSPQTGKAWTLEGESDDEVKSELDMD
FDGGDAKMVDLESGGDGPEEEEEIDPLDAYMNSKVLPEVEKLRSSSLETGDQQKEGLNKS
LGRIIQGEDSDSDYSEPKSDDDPSLEEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKN
FYIEVKDISRMTQDVVNAYRKELELKVHGKDVPRPIKAWHQTGLTSKILDTLKKLNYVKP
MPIQAQALPIIMSGRDCIGIANTGSGKTLAFVLPMLRHIKDQPPIEAGDGPIGLVMAPTR
ELVQQIHSDIKRFAKALGVRCVAVYGGSGVAQQINELKRGTEIVVCTPGRMIDVLCTSSG
KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVV
DKPVEIQVGGRSVVNKDIIQLVEIRPESERFSRLLELLGEWYEKGKVLVFFRSQEKCDAL
YDDLKTNYGYTCLSLHGGKDQIHRESALSEFKNNVCNLLIATSVAARGLDVKELELVVNF
DPPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAD
GFMAKVKQGTEQAHGTGYGGSGFKFNEDDEEVRKAAKKAQAKEYGFEEEESDSEDENDVV
RNAGDDISQQQAPFAQIAAISAAASNAPVTANQLPPNGGGLATEPGVPPTDGSGRTAALV
AAANLQHYLARIQADAMPEHYEAELEINDFPPNTLWKVTRKETLGPISEWSGAAITTRGK
WCDAGLIPGPGERKLYLFIEGPTKESVKTAKAELKRVLEDITNQAFSLPGRAQPGRYSVL
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggataatattttgaagaagaatcgccgagatcgtgatcgcagtaaggagcgg
aggaaggagccgcgtacgatacggtgtgagaaagtaaagagaagtgatttcgaaaagaga
gaggattctgaagagagggagaagcttaaagaaaaggagaagatgcggagacggagggat
agaaaaagtagggattttgatgaagaggacgagagggataaacgtcgaggggaggagaag
ggaagaggacaacgagaacatgagatagatagaggcaacgatcggaaaagggacagagag
aggagagaacatgagaaggagagaattaaagatgaagatgacaacggtgagaagaaaatc
cgggaagaagaagtagacgatgaggagttgtataaacggaggagaagagtccaggagtgg
cagaagttgaagaggcaaaaggaagaatctgaaagtgaaagtaagagtcctcagaccggt
aaggcttggactcttgaaggagaatctgatgatgaagttaaatcagagttagatatggat
tttgatggtggagatgccaagatggtagacttggagagtggaggtgatggacctgaagaa
gaagaggaaattgatcctttagatgcttatatgaattctaaggtattacctgaggttgag
aagcttaggagtagttctctagaaactggtgaccagcaaaaggaaggtttgaataagtcc
cttggtaggataattcaaggtgaagattctgattctgattattcagaaccaaagagtgat
gatgatccaagtttagaggaagatgatgaggagttcatgaagagagtaaagaagacaaaa
gcagaaaaattgtctcttgttgaccactccaaaatagagtatgaacctttccggaagaac
ttctatatcgaagtcaaggatatctcaagaatgacacaggatgtagttaacgcttacaga
aaggaattggagctgaaagttcatgggaaagatgtaccaagacccatcaaagcttggcac
cagactggactaactagcaaaattttggatactctaaagaagcttaactatgtaaagcca
atgcctatccaagcacaagcactcccaatcatcatgagcggtcgagactgcattgggatt
gcaaacaccgggtcaggtaaaacccttgcctttgttttgcctatgttgaggcatatcaaa
gatcagcctcccattgaagctggtgatgggccgattgggcttgtaatggcacctactagg
gagcttgttcagcagattcacagcgatatcaaaaggtttgctaaggcattgggtgtaaga
tgtgtagctgtgtatggaggatcaggagttgcccagcaaatcaatgagcttaagcgaggt
actgagattgttgtgtgcactccgggaagaatgatcgatgttctttgcacaagcagtgga
aaaatcaccaatctgcgaagggtcacatatttggtaatggatgaagctgatcgtatgttt
gacatgggttttgagcctcaaataactcgtattgttcaaaatattcgacctgatcgtcaa
actgtgctcttttctgccacttttccacgccaagttgaaactttggcacgcaaagtcgtg
gacaaacctgtggaaatacaagttggtggaaggagtgttgtgaataaagatataattcag
ttagttgaaatcagaccggagagtgagaggttctcaagacttctggaacttcttggggaa
tggtatgaaaaaggaaaagttttggtgttttttcgttcgcaggaaaaatgtgatgctttg
tacgatgatttgaagaccaattatggttacacctgtctatctcttcacgggggtaaggac
cagattcatcgtgaatcagctttatctgaatttaagaacaatgtctgcaatttgttgatt
gcaacaagtgttgcagcgaggggtctagatgtgaaagagcttgagttggttgtaaacttt
gatccgccgaaccactatgaagactatgtgcatcgtgttggcaggactggtagggcaggg
cggaaaggctgtgctgtaacatttatctccgaggatgatgcaaaatatgcaccagattta
gtcaaggccctggaactatctgagcagccagttcctgatgatgtaaaagcagtagctgat
gggttcatggcgaaagtaaaacagggtactgagcaagctcatggaactggctatggtggt
agtggctttaaatttaacgaagacgatgaagaagttaggaaagcagcaaagaaagcacaa
gcgaaggagtatggctttgaggaagaggagtctgactcagaagatgagaatgatgtagta
agaaacgctggtgatgatatctcacagcagcaggctccttttgctcagatagccgccatt
tctgctgctgcttctaacgcgcctgtgactgctaaccaattgcctccaaacggtggtggg
ctagccaccgagccaggtgtccctcctactgatggatcaggccgcactgcagccctggtt
gctgccgctaacttgcaacattaccttgcaaggattcaagctgatgcgatgcctgaacac
tatgaagcagaattggaaatcaatgattttccaccgaatactctgtggaaagtgacccgc
aaagaaacgctaggtccaatatcagagtggagtggagccgccattaccactagaggtaag
tggtgtgatgcaggacttatcccgggacctggggaacgcaagctctatttgttcattgaa
gggcctaccaaagaatctgttaagacagcgaaagccgaactgaagcgtgttcttgaagac
ataactaatcaagccttttcccttcctggacgagcacaacctggcagatactctgtccta
taa
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