Arabidopsis lyrata (lyrate rockcress): 9318706
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Entry
9318706 CDS
T01578
Name
(RefSeq) cell division control protein 48 homolog A
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9318706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9318706
03009 Ribosome biogenesis [BR:
aly03009
]
9318706
04131 Membrane trafficking [BR:
aly04131
]
9318706
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9318706
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
9318706
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
9318706
Membrane trafficking [BR:
aly04131
]
SNARE
SNARE associated proteins
Others
9318706
Autophagy
Aggrephagy
Other aggrephagy associated proteins
9318706
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9318706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
AAA_33
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
Vps4_C
ABC_tran
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
NB-ARC
NACHT
TsaE
AAA_24
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
9318706
NCBI-ProteinID:
XP_020888361
LinkDB
All DBs
Position
Unknown
AA seq
809 aa
AA seq
DB search
MSTPAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTVCIALADESCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWN
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI
FKAALRKSPIAKDVDIAALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRNEN
PEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFEN
STGSGATTGVADPFATSAAAAGDDDDLYN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccccagctgaatcttcagactcgaaatcgaagaaagatttcagtactgctatt
ctcgagaggaagaagtctccgaaccgtcttgtcgtcgatgaggctatcaacgatgataac
tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc
attctcatcaagggtaagaaaaggaaggacactgtctgcattgctctcgctgatgagtca
tgtgaggagccaaagatcagaatgaacaaagtagtcagatctaacttgagggttagactc
ggagatgttatttctgttcaccaatgcccagacgtcaagtacggaaagcgtgtgcacatc
ttgcctgttgatgatactgttgaaggagtgactggaaacctctttgatgcttacctgaaa
ccttatttcctggaggcataccgtccagtgaggaagggtgatctcttcctagtcagagga
ggcatgaggagtgtggagttcaaagtcatagagacagatcctgctgagtactgcgtggtt
gctccagacacagagattttctgtgagggtgagcctgtgaagagagaggatgaagaaagg
ctagatgatgtaggttatgatgatgttggcggtgtcaggaaacagatggctcagatcaga
gaacttgttgaacttcccttgaggcatccacagctattcaagtcaattggtgtcaagcca
ccaaagggaattcttctttatggaccacctgggtccggaaagactttgattgctcgtgct
gtggctaatgaaactggtgcctttttcttctgtatcaacggacctgagatcatgtccaaa
ctggctggtgagagtgagagcaacctcaggaaagcatttgaggaggctgagaaaaatgcc
ccttcaatcatattcattgatgagattgactctattgcacccaaaagagagaagacgaat
ggcgaggttgagaggaggattgtgtctcagctgcttacgcttatggatggactgaaatcg
cgtgctcatgttattgtcatgggagcaaccaatcgccccaacagtatcgacccagctttg
agaaggtttggaagatttgacagggagatcgatattggggttcctgacgaaattggacgt
cttgaagttctgaggatccatacaaagaacatgaagcttgctgaagatgtggatctcgaa
aggatctcaaaggatacacacggttacgtcggcgctgatcttgcagctttgtgcacagag
gccgccctgcaatgcatcagggagaagatggatgtgattgatttggaagatgactccata
gatgctgaaatcctcaattccatggcagtgactaatgaacatttccacactgctctcggg
aacagcaacccatctgcacttcgtgaaactgttgtggaagttcccaacgtctcttggaat
gatattggaggtcttgagaatgtcaagagagagcttcaggagactgttcaatacccagtc
gaacacccggagaagtttgagaaattcgggatgtctccatcaaagggagtacttttctac
ggtcctcctggatgtgggaaaactcttttggccaaagctattgccaacgagtgccaagct
aatttcatcagtgtcaagggtcccgagcttctgacgatgtggtttggagagagtgaagcg
aatgtccgtgaaatcttcgacaaggcccgtcaatccgctccatgtgttcttttcttcgat
gagcttgactccattgcgactcagagaggaggcggaagtggaggcgatggaggcggcgct
gcggatagagtgttgaaccagcttttgactgagatggatggaatgaacgccaagaaaact
gtcttcatcattggagcaaccaacagacctgacattatcgattcggctcttctccgtcct
ggaaggcttgaccagctcatttacattccactaccagacgaggattcccgtctcaatatc
ttcaaggccgccttgaggaaatctcctattgctaaagatgttgacatcgctgcactcgct
aaatacactcagggattcagtggtgctgatatcactgagatttgtcagagagcttgcaag
tacgccatcagagaaaacattgagaaggacattgaaaaggagaagaggaggaacgagaac
ccagaggcaatggaggaagatggagtggatgaagtatcagagatcaaagctgcacacttt
gaggagtcgatgaagtatgcacgtaggagtgtgagtgatgcagacatcaggaagtaccaa
gcttttgctcagacgttgcagcagtctagaggattcggttctgaattcaggttcgagaat
tctactggttcaggtgccaccactggagtcgcagatccgtttgccacgtctgcagctgct
gctggggacgatgatgatctctacaattag
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