Arabidopsis lyrata (lyrate rockcress): 9318848
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Entry
9318848 CDS
T01578
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
aly04141
Protein processing in endoplasmic reticulum
aly04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9318848
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9318848
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
9318848
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aly01009
]
9318848
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9318848
03009 Ribosome biogenesis [BR:
aly03009
]
9318848
03110 Chaperones and folding catalysts [BR:
aly03110
]
9318848
04131 Membrane trafficking [BR:
aly04131
]
9318848
03051 Proteasome [BR:
aly03051
]
9318848
03029 Mitochondrial biogenesis [BR:
aly03029
]
9318848
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9318848
Protein phosphatases and associated proteins [BR:
aly01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
9318848
Spliceosome [BR:
aly03041
]
Complex B
Other components
Prp19 complex
9318848
Complex C
Prp19-CDC5 complex
9318848
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
9318848
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP70 / DNAK
9318848
Membrane trafficking [BR:
aly04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
9318848
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
9318848
Proteasome [BR:
aly03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
9318848
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
9318848
Exosome [BR:
aly04147
]
Exosomal proteins
Proteins found in most exosomes
9318848
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
DACNG
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
9318848
NCBI-ProteinID:
XP_002884912
UniProt:
D7L0I2
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPTNTVFDAKRLIGRRYSDPSVQADKSHWPFKVISGPGEKPMIVVNHKGEEKQFSA
EEISSMVLVKMREIAEAFLGTPVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVDAKNALENYAYNMRNTIKDEKIASKLDAADKKKIEDAIDQAIEWLDGNQLAEADEFED
KMKELESICNPIIARMYQGAGPDMGGAAGMDDDAPASGSGGAGPKIEEVD
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtaaaggtgaaggtccagctattggtatcgatctcggtacaacttactcttgc
gtcggtgtttggcaacatgaccgcgtcgaaatcatcgccaacgatcaaggcaaccgtacc
actccttcctacgttgctttcactgatagcgaacgtctgatcggagatgctgcgaagaat
caagtcgccatgaaccctaccaacaccgtctttgatgctaagcgtctaattggaagaaga
tacagtgatccctctgttcaagcggacaagagtcactggccttttaaggttatttctggt
ccaggtgagaagcctatgatcgtggtcaatcacaagggggaggagaaacagttctctgct
gaggaaatctcttcgatggttctcgttaagatgcgggagattgcagaagctttccttggt
actccagttaagaacgctgtggttacagttcctgcttatttcaacgactctcagcgtcag
gcgactaaggatgctggggttatctctggtctcaatgtcatgcgtatcatcaatgagcca
actgctgctgcgattgcttacggtcttgacaagaaggcgtcgagtgttggcgagaagaat
gttcttatctttgatttgggaggtggtacttttgatgtgtctttgcttacgattgaggaa
ggtatctttgaagtgaaggcaacagctggtgacacgcatcttggtggtgaggactttgac
aacaggatggttaatcattttgttcaggagtttaagaggaagaacaagaaggatattact
ggtaatccaagagctttgaggaggcttaggactgcttgtgagcgggcgaagagaactctt
tcttcgactgctcaaacgactatagagattgactccctttttgagggtattgatttctac
acaaccatcactcgtgctaggttcgaggagctcaacatggatttgtttaggaagtgtatg
gaaccagtggagaagtgtttgagagatgctaagatggacaagaacagtgtacatgatgtt
gtccttgttggtggctctacaagaatccccaaggtgcagcagctattgcaagactttttc
aacgggaaagagctctgcaaaagcattaaccctgatgaggctgttgcttacggagcagct
gttcaagctgcaatcttaagcggtgaagggaatgagaaggtccaagacttgttacttctt
gatgtcactcctctatccttgggtttggaaactgccggtggtgttatgactgtcttgatt
ccgaggaataccacaattccgaccaagaaagagcagatcttctcgacctattcagacaac
cagcccggtgtattgatccaggtttacgaaggggagagagcacggacaaaggacaacaat
cttttgggaaagttcgagctcagcggtataccacctgctccacgaggagttccgcagatt
actgtttgtttcgacatcgacgccaatggtatcctgaatgtgtcggctgaggacaagacg
actggacagaaaaacaagatcacaatcacaaacgacaagggaaggttatcgaaggaagag
atcgagaagatggtacaagaagcagagaagtacaaggctgaggatgaagaacacaagaag
aaggttgatgcaaagaacgctctcgagaactatgcatacaacatgaggaacacgatcaaa
gacgagaagatcgcatctaagctcgatgcagctgacaagaagaagattgaggatgcaatc
gaccaagctattgaatggttagatgggaatcagctggctgaggcagatgagttcgaggat
aagatgaaggagctcgagtctatttgcaacccaatcattgccagaatgtaccaaggtgct
gggccggatatgggtggtgctgcaggaatggatgacgatgctcctgctagtggtagcggt
ggtgctggccccaagattgaagaagttgattaa
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