Arabidopsis lyrata (lyrate rockcress): 9318881
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Entry
9318881 CDS
T01578
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9318881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9318881
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9318881
mRNA degradation factors
5'-3' decay
Decapping complex
9318881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR75_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
9318881
NCBI-ProteinID:
XP_002882815
UniProt:
D7L1C8
LinkDB
All DBs
Position
Unknown
AA seq
1359 aa
AA seq
DB search
MASSPGNTNPHNPPPFDLGILFKPPSNPYPPPPASYPPPTGPFLHNQYDQQHYAPPGISA
QPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNNNGVP
VANQEPSHQLPVVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQ
PQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVT
DMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKHPRVC
WHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTD
LSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILI
TGGPLNREMKIWVSAGEEGWLLPADAEAWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAG
LLLLANAKRNALYAVHLDYGSSPVGARMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCV
QTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGTSEPSGLKPTDLPSVDSVP
KPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSTYATSPQLPLSP
RLSSKLSGYHTPVDAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEESSRSK
DSNVTPDDDVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRERDANIQDVNN
DVRDSEVEVKEINEARSTQNGEINDHGETENRTSENREKVFCSQASNLSTDMARDCYPST
EGAFIPGDPKAYGQPLKAGDEIGLDSRGVSAKLPESGSSSGLPQLPGITSKGKKQKAKNS
QGPGLSSTSSNVANLADSFIEQSQSLSHPMTDSLPQLLAMQETMNQIMASQKEMQRQLSN
ATTGPIVKESKRLEVALGRMIEKSSKSNADALWARFQEETVKNEKALRDHAQQIVNTTTN
FMSKELNAMFEKAIKKEVAAIGPALARSVIPVIEKTVSSAITESFQRGIGDKAVNQLDKS
VNLKLEATIARQIQAQFQTSGKQALQEGLRSSVESSVIPSFERACKAMFDQIDSAFQKGI
AEHTNAAQQRFDSGHSQLAHTLRETITSASSVAQALSRELAESQRNLLALAAAGANSGGS
NPLVTQLSGGPLGALLDKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQ
VDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHAR
PIFEQVYQILHHHRNAPGSDVSAIRLIMHVINSMLMGCK
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttctcctggtaatactaaccctcataatcctcctccgtttgatctcggtatt
ctcttcaaacctccatcgaatccttatccgccgccgccggcatcttatcctccgcctaca
ggtccttttcttcacaatcagtacgatcagcagcactacgcgccgcctggtatctccgct
caaccatcgccggtgactcaacagcaacaggatgtgtcttcctcttccgccgcgactaac
ttgcatccacagagaacgctatcttatcccacgccacctctcaacctacaatccccccgt
tccaatcacaatcccggtacgcacatcctcgctctcctcaataataacaacggagtcccg
gtggctaaccaagagccgtcgcatcagcttccagtagtgaatcacaacgagatcgctcgc
tcttttcccggcggttcaggtcctattcgtgttccgagctgtaaactgcccaagggaagg
cgattgattggtgaacacgcggtgtacgatgtggatgtgagattacaaggtgagattcag
ccgcagctggaggtgactccgattaccaaatacggctcggatcctcagctcgtagtcggt
aggcaaatcgccgtgaataaggtctacatttgctatggattgaaaggaggaaacattagg
gttctcaatatcaacacagcattgaggtctctgttccgtggccattcacagagagtgacg
gacatggctttctttgccgaggatgttgatatgttggccagtgttagtctagatggaaaa
gttttcgtgtggaaaatttctgaagggtctgagggagaggatcagccccaaataactggg
aagatagtacttgctcttcagatactaggagaggaagacaccaaacatccacgcgtttgt
tggcactgccacaaacaggaaattttggtagtttcaattggtaaacatgtgttgcgaatt
gatactacaaaagttggcagaggtgaagtattctctgctgaggcccctctccagtgtccc
cttgataaactcattgatggtgttcagattgttggtaagcatgatggagaagttactgat
ttgtcaatgtgccaatggatgaccacacgcctggtttcttcttcagttgatggcacgatt
aagatatggcaagatcgtaaggcacaaccacttgtagttttgaggcctcatgatggacat
ccagtcagttcagccacgtttgtgacatctcctgagagacctgatcacatcatacttatc
acggggggtcctctaaatcgagaaatgaaaatctgggtctctgctggggaagaagggtgg
cttctaccagctgatgctgaagcatggaggtgtacccagactcttgacttgaaaagttca
actgagccacgagctgaagaggcattttttaaccaagtcatagcattatctgaagcaggc
ttgcttttacttgcaaacgcaaaaaggaacgctctatatgctgtgcatttggactatggt
tcttctccagttggtgcgcggatggattacctatcagagtttacagtcactatgcccata
ttgagtttcattgggacaaatgatcctccagaagaacccattgttaaggtttattgtgtt
cagactctagcaatccagcagtatacattagacttatgcttatgcttgccaccacctata
gaaaatatgggtttggagaagtcagattctagtgtatcgcgagaggcaaatcttgttgaa
ggcacatcagaaccatctggacttaagcctactgacttaccttcagttgattcagtgcca
aaaccttctattatagtgaatagatcggaaagtgctaataagttgagttttccatcagca
gaagccacatcacaagcaattgttccacccaatggtgaacctaaaacttctggcctgcca
tctcagaccagtggtgcaggttctacgtatgctacttcaccccaacttcctctaagtccc
agactatcaagtaaactttctggctatcacactcctgtagatgctattgagccagtaata
cctcatcatgagctcggtggcaaaacaccttctgctgattattctgttgataggcaaatg
gatgctgttggagaaagaaatttggacgtgtcatccgttgaagaaagctcaagaagcaag
gactcaaatgttacgcctgatgatgatgtgtctgggatgcgaagcccatcagcttttttc
aaacaccccactcatcttgtaactccttcagagatattgatgggtgtttcgtccgctgaa
gcctccattactactgaagacaggagagaaagggatgcaaatattcaggacgtgaataat
gatgtaagagactccgaagttgaggtgaaagaaataaatgaagcaaggtcgacacagaat
ggtgaaatcaatgatcatggtgaaactgagaatcgcacttcagaaaatagagaaaaagtc
ttctgctcacaggcttcaaatctcagcaccgatatggcaagagactgttatccaagtact
gagggagctttcattccaggggatcctaaggcttatggacaacctttaaaggctggagat
gaaattggtcttgactcgagaggtgtgtctgcaaagcttcctgagtcgggttcatctagt
gggcttccacagttgccaggtataactagcaaagggaagaagcagaaggccaaaaattca
cagggtcccggtttgtcatctacatcctcaaatgttgctaatctggctgactccttcatt
gagcaaagtcagagcttaagtcatcccatgacagattcacttcctcagttgttagcaatg
caagaaacgatgaatcagataatggcttcacagaaggagatgcagagacaactatcaaat
gctaccactggccctatcgtaaaagaaagtaaaagactagaagttgcgttagggagaatg
attgagaaatccagcaagtcaaatgcggatgctctatgggcccgcttccaagaggagact
gttaagaatgagaaggcattgcgtgaccatgcacagcaaattgtgaatacaacgacaaac
ttcatgagcaaggagttaaatgccatgtttgagaaagcgataaagaaggaagttgctgca
attggtccagcccttgcacgttcagtaataccagttattgaaaaaactgtatcttccgca
atcacagagtcctttcagagaggaattggtgacaaagcagtcaatcagcttgacaaatct
gttaatctaaagcttgaagcaaccatagctaggcaaattcaagcccaatttcaaacctct
ggcaagcaagccctccaggaaggtcttaggtcaagtgtggagtcctcagtcataccttcc
tttgagagggcatgcaaggccatgtttgaccaaatagactcagccttccagaaaggtatt
gctgagcatacaaatgcagcccagcaacggtttgactctggacattcccagcttgctcat
actttaagggaaacaattacttctgcgtcgtcagttgctcaagccttaagtcgtgaatta
gccgaaagccaaaggaatctcttagctctcgcagctgctggagcaaattccggtgggtct
aatcccttggttactcaactaagtggcggacctttgggtgctcttcttgacaaggttgaa
gcacctatggacccaacaacagaactatcaaggttgatatctgaacgcaagtacgaagaa
tctttcacttcggccctacagagaagcgatgtctctatagtatcatggctttgctcacag
gtggatcttcgtggattactggcaatgaatccgctaccgctgagccaaggcgtgcttctt
tcactgctgcagcagctagcctgcgacatcagcaaggacacatcccgtaagctggcttgg
atgactgatgtggttgcagccataaacccatcagaccagatgattgcggtccacgctcgc
ccaatcttcgaacaggtctatcagattctgcaccatcaccgcaacgcaccaggcagcgat
gtctcagccatcagactgataatgcatgtcataaactccatgcttatgggctgcaaatga
DBGET
integrated database retrieval system
