Arabidopsis lyrata (lyrate rockcress): 9318922
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Entry
9318922 CDS
T01578
Name
(RefSeq) chaperonin CPN60-like 2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9318922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9318922
03110 Chaperones and folding catalysts [BR:
aly03110
]
9318922
03029 Mitochondrial biogenesis [BR:
aly03029
]
9318922
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9318922
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
9318922
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
9318922
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP60 / Chaperonin
9318922
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
9318922
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9318922
Exosomal proteins of other body fluids (saliva and urine)
9318922
Exosomal proteins of breast cancer cells
9318922
Exosomal proteins of colorectal cancer cells
9318922
Exosomal proteins of bladder cancer cells
9318922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
9318922
NCBI-ProteinID:
XP_002884993
UniProt:
D7L293
LinkDB
All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MYRVLSKLSSSIGSSTSRKLVSGRIISSRNYAAKDISFGVGARAAMLQGVSEVAEAVKVT
MGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTT
CATVLTQAILIEGCKSVAAGVNVMDLRVGINMAISAVVSDLKSRAVMISTPEEITQVATI
SANGEREIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKT
QKCELENPIILIHEKKISDINSLLKVLEAAVQSSRPLLIVAEDVESDALAMLILNKHHAG
FKVCAIKAPGFGDNRKASLDDLAVLTGAEVISEERGLSLEKIRPELLGTAKKVTITRDDT
IILHGGGDKKLIEERCEELRSANEKSTSTFDKEKTQERLSKLSGGVAVFKVGGASESEVG
ERKDRVTDALNATRAAVEEGIIPGGGVALLYATKALDNLQTQNEDQRRGVQIVQNALKAP
AFTIAENAGYDGSLVVGKLLEQDDCNFGFDAAKGTYVDMVKSGIIDPVKVIRTALTDAAS
VSLLLTTTEASVLVKADENTPNHVPDMASMGM
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgagttctatcaaagttatcttcttcaattggctcgtctacttccaggaaactg
gtttctgggcggattataagtagcagaaactatgcggccaaggatatcagtttcggggtc
ggagctcgggcagctatgttgcaaggtgtatccgaggttgcagaagctgtgaaagtcaca
atggggccaaagggaagaaatgtgataattgagagtagttacggcggaccaaagatcaca
aaggatggtgtcaccgttgcaaaaagcatatcatttcaagcaaaagctaagaacattggt
gcggaactcgtgaaacaggttgcaagtgccactaacaaggtcgctggagatggtaccact
tgtgctactgttttgactcaggcgatactcatcgaaggctgcaagtcagtggctgctggt
gtaaacgtgatggatttgcgtgttggcataaatatggcaatttctgcagttgtctctgat
ttgaaaagcagagctgttatgattagcaccccagaagagatcacacaggttgccactata
tctgcaaatggggagcgtgagataggggaattaattgcaagagccatggagaaagttgga
aaggaaggggttatcactgttgctgatggtaacactttagataacgagctggaagtagtg
gaaggaatgaagctagccagaggttacatttctccttattttatcacggatgagaagacc
cagaaatgcgagcttgaaaatcccatcatcctcattcatgagaagaagatttcagacatt
aactctttgttgaaagttttagaagcagctgtgcaaagtagcagaccacttcttattgta
gcagaagatgttgagagtgatgcattagctatgctaattcttaataagcatcatgctggg
tttaaggtatgcgctatcaaggctccggggttcggtgacaacaggaaagcaagcttggat
gatcttgcggttcttactggtgcagaggttatctctgaggagcgtgggctatctctagaa
aaaattcgccctgaattgcttggaactgcgaagaaggttaccatcacccgtgatgacact
attatcctacatggtggtggtgataaaaagctaatcgaagaaagatgtgaagagttaaga
tcagccaatgaaaagagtacctccacttttgataaagagaaaacgcaagaaagactctca
aaactatctggtggtgttgcagtcttcaaggtgggaggggcaagtgaatctgaagttgga
gagagaaaagacagagtcactgatgctttaaacgctacaagagcagctgtagaagaaggc
atcataccgggtggtggtgtggctctattatatgcgacaaaggctttagacaaccttcaa
actcaaaacgaggatcaaagaagaggtgttcaaattgttcagaatgctctcaaggctcct
gcatttacaatagctgaaaatgccggttacgatggttctttagtggttggcaagttatta
gagcaggacgattgcaattttggtttcgatgctgccaaaggtacatatgtggatatggtg
aaatctggaatcatagacccagtcaaggtgatcagaaccgccttaaccgatgccgctagc
gtttctttgcttttgacaacaacagaagcctcagtgcttgtgaaggcagacgagaacact
ccaaaccatgtccctgatatggccagcatgggcatgtga
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