Arabidopsis lyrata (lyrate rockcress): 9319059
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Entry
9319059 CDS
T01578
Name
(RefSeq) tRNAse Z TRZ4, mitochondrial
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aly03016
]
9319059
Enzymes [BR:
aly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
9319059
Transfer RNA biogenesis [BR:
aly03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
9319059
Prokaryotic type
9319059
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
9319059
NCBI-ProteinID:
XP_002882993
UniProt:
D7L5M6
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MLTSSMPHRHVPQNLSLFGFSPLKSSSFALFLRPFSLYPPIFASSSPSPSRRPPRTAGYR
RSDPSHPPRRKWSSLEEQKRKGRSPMEKEKASSFNHSSDSFEFNKRRAEGLDKIDKPKKN
LKRNTRTLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIK
LSKVDHIFLSRVCSETAGGLPGLLLTLAGIGEEGLSVNVWGPSDLKYLVDAMRSFIPRAA
MVHTRSFGPSLNASDSTPQSGLSKPKDDAYVLVDDEVVKISAILLEPSHLEESGSKPGET
AVIYVCELPEIKGKFDPKKAMALGLRAGPKYSYLQSGQSVKSDFKDITVHPSDVMGPSVP
GPVVLLVDCPTKSHAEELLSIPSMKSYYSCLDNSTDGAKLVNCIIHLSPASVTNSSTYQS
WMKRFHSAQHILAGHEAKNMEFPILRASSRITARLNYLCPQFFPAPGFWSPQHVNNSINS
TSLSKCFDSNLGESISAENLLKFTLRPHSNLGVDRTCIPSRLTSLRVMDELLSEIPEISS
KTEEIKRLWNGQHNKMMIEEPWLGESTVPSCLENIRRDDMEIVLLGTGSSQPSKYRNVTA
IYVDLFSRGSILLDCGEGTLGQLKRRYGLEGADEAVRNLRCIWISHIHADHHTGLARILA
RRRELLKGVAHEPAIVVGPRPLKNFLDAYQRLEDLDMEFLDCRNTTTTSWASQETTRPEK
NTNSGNAEGSLFSKGSPMQSIYKRSSTPLTDNSSALPFLKKLKNVLGEMGLEDLISFPVV
HCPQAFGFVVKAAKRKNIAGDEIPGWKMVYSGDTRPCPEMVEASKGATVLIHEATFEDAL
VEEAVAKNHSTTKEAINVGSSAGVYRTVLTHFSQRYPKIPVIDESHMHNTCIAFDMMSVN
MADLHVLPKILPYFKTLFRNQVVEEEEEETDNDSLMSDKVPSFFIN
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgttaacttcatcaatgcctcatcgtcatgtacctcaaaacctaagccttttcggattt
tctcctctcaagtcttcttctttcgcgctttttctcagacccttttctctctacccacca
atcttcgcttcttcttctccgagtccgagtcgtcgtcctcctcgcaccgccggttaccgt
cgcagtgacccttctcatcctccaagacgcaagtggagtagtttagaagagcagaagaga
aaaggtaggtctccgatggagaaagagaaagctagtagttttaatcattcttctgattct
ttcgagtttaataagagaagagctgagggattggataagattgataagcctaagaagaat
ctcaagaggaatactcgcacccttaatcctaccaacaccattgcctatgtccagatcctt
gggactggaatggatacacaggatacatcaccttctgtattactcttctttgataaacaa
agattcatctttaatgctggagaggggttgcaacgtttttgtacagaacataaaattaag
ttatcaaaggtagatcatatctttttgtctcgcgtgtgctcagagacagcgggtgggctt
ccaggtcttctactgactctagctggtatcggtgaagaaggactatccgtaaacgtgtgg
ggtccttcggatcttaagtatttagttgatgctatgaggtcatttatccctcgtgctgca
atggttcatacaagaagttttggtccatcattgaatgcatctgactccacgcctcagagt
ggcttaagtaaacccaaagatgatgcctatgttcttgtggatgacgaagttgtgaaaatc
tccgccattctcttagaaccaagtcacttagaggaatccggcagcaaacctggtgaaacg
gcagttatatatgtatgtgaattacctgaaatcaaaggaaagtttgacccaaagaaggcc
atggctcttggactgagagctggtccaaaatacagttatcttcaatctggacagtcagtc
aagtcagattttaaagatattacggttcatccgagtgatgtcatgggaccttcagttcct
ggtcctgttgttttgcttgtggactgtccaacaaagtcacatgccgaggaactgctatct
ataccgtctatgaaaagttattattcatgtcttgacaattcaacagatggagctaagctt
gttaattgtattattcatctaagtccagcttctgtaacaaatagttctacttaccaaagc
tggatgaagagattccattctgcccagcacattctcgctggacatgaagcgaagaatatg
gagtttccaatcctgagagccagttctagaatcacagccagacttaactatttatgccca
cagttcttccctgcgcctggattttggtctcctcaacatgttaataactcaataaactcc
acttctttgagcaagtgcttcgattcgaatcttggtgaaagcatttccgctgaaaatctc
ctcaagttcactttgcgtccacatagtaatcttggggtagacagaacttgtatccctagt
cgattgacatccttacgagtgatggatgagcttctttcagaaattcctgagatcagcagt
aagaccgaagaaatcaagcggttatggaatggacaacacaacaagatgatgatcgaagag
ccatggctgggtgaaagcactgttccaagctgtcttgaaaacattagaagagatgacatg
gagatagttcttttgggcactggttcctcccaaccctcaaaataccgaaatgtcaccgca
atttacgtcgacctattctctagaggcagtattctcttggattgtggggaaggtacctta
ggccagcttaaacgaagatatggtttagaaggagctgatgaagcagtcagaaacttgaga
tgtatatggatctctcacatccatgctgatcaccatacgggtcttgcaagaatccttgct
cgcagacgtgagcttctgaaaggagtggctcatgagccagcaattgtggttggaccgaga
ccgcttaagaactttctcgatgcatatcaaagactcgaggatttagatatggagtttctt
gattgcaggaacaccacaacaacttcttgggcttctcaagaaaccacccgccctgagaaa
aataccaatagcggtaatgcagagggttctttgttcagtaaaggaagtccaatgcagagt
atttataaaagatcaagtaccccactgactgacaattcttcagctttaccattcttgaag
aaactgaaaaatgtcctaggcgaaatgggtttggaggatttgattagctttcctgttgtg
cattgccctcaagcctttgggtttgttgtaaaagcagcgaaaagaaaaaacattgccgga
gatgagattcctgggtggaaaatggtttactcaggtgacacaaggccttgtcctgagatg
gttgaagcttcaaaaggagcaactgttcttatacatgaggcgacatttgaggatgcgttg
gtagaagaagctgtggctaagaatcatagcacaactaaagaagcaatcaacgttggatct
tcagcaggtgtataccgaacagtactgacccattttagccagagatacccaaagatcccg
gttattgacgagtcgcatatgcacaatacatgcattgcctttgatatgatgagtgtaaac
atggcggatctacatgtccttccaaagattttaccttacttcaaaactctattcagaaac
caagtggttgaagaagaagaagaagagactgataatgatagcttaatgagtgacaaagtc
ccaagctttttcatcaattag
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