Arabidopsis lyrata (lyrate rockcress): 9319148
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Entry
9319148 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9319148
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9319148
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9319148
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Ortholog
Paralog
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Motif
Pfam:
Ion_trans
cNMP_binding
DUF6525
bPH_8
Motif
Other DBs
NCBI-GeneID:
9319148
NCBI-ProteinID:
XP_020889108
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MASLNENEETPLLPISDSSSRTSDFTSRTRTVSLSNLSSSVDGFENSTVVFGYTGPLRTR
RHPPLLQLSGPLYSTCKPEPLFLPLPSSDSVGVSSQPERDPSFSALEHKNSSDDESLLKY
ANLLGSGQLGMCNDPYCTTCPSDYFRKTAQTPTPRVSAIFYSPFHNALYDDAKDWARRFA
SSVNRYLPGIMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMIDWPMAK
ALVAVKSVTDIIISVNILLQFRMAYVARESTVVGAGQLVSHPKKIALHYFRGKFFLDLFI
VMPLPQILILWIIPEHLGASGISGANYTKNLLRAVVLFQYTSKLYRLLPFLAGQTQTGFI
FESAWANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLQYACGNFERECRNLISWTCGNG
NCNVSVRAAWKDNACFQEDGFPYGIYLKAVNLTNHSSLFTRYSYSLFWGFQQISTLAGNQ
VPSYFLGEVFFTMGITGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRL
PNGIRKRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDESI
LDAISERLKQRTYIGNSTVLHSGGLVEKMVFIVRGEMESIGEDGSVLTLSEGDVCGEELL
TWCLKRFSVNPDGTRIKMPPKGLVSNRNVRCVTNVEAFSLSIADLEDVASLFSRFLRSHR
VQGAIRYESPYWRLRQIQVAWRYRRRRLQRVYSAQSSYIR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcttcactcaacgaaaacgaggagactcctctgcttccaatttcagactcatcgtct
cgtactagtgatttcacttccaggactcgtaccgtttccctctcaaacctttcttcctcc
gttgacggatttgaaaattcaactgtggtttttggctacacaggtcctcttcgaactcgg
agacatcctccgttacttcaactgagtggtcctctttactctacttgcaaacctgaacct
ctctttcttcctcttccttcttctgattccgttggtgtctcttctcagcctgagagggat
ccttctttttctgctcttgaacacaaaaactcctcagacgatgagtcccttttgaaatac
gcaaatctcttgggatctggacaattagggatgtgtaatgatccttactgtactacttgc
ccttctgattacttccgtaaaacagctcaaacccctactcccagagtttctgccattttt
tattccccgttccataatgctctgtatgatgatgctaaagattgggcgaggagatttgct
tcctctgttaatagatacttacctggaatcatgaatcctcatgccaaagaggttcaaacc
tggactaaattcttcgccctttcatgcttgttagctatttttatagatcctctcttcttc
ttcctcataaaagttcaagagcaaaacaaatgcattatgattgattggccgatggctaaa
gctttggtagctgttaaaagtgtaacagatattataatctctgtgaacattctgcttcag
ttccgaatggcctatgtagctcgtgagtctacggtagttggtgctggccagttagttagt
catcccaaaaaaattgcccttcattactttagaggaaagtttttccttgacttgttcata
gtgatgccacttccacagatactgatattatggataataccagaacacttgggggcctct
gggatatccggggcaaactacacgaaaaaccttttacgcgctgtagttcttttccaatac
acttcaaagttatatagacttctaccatttcttgctggacaaacacagaccgggttcata
tttgagtcagcttgggctaattttgtcattaatcttctcactttcatgcttgctggacat
gttgttggctcttgctggtatctttttggtctgcagagagttaatcaatgccttcaatat
gcttgcggtaattttgagcgtgaatgtcgaaatcttataagttggacttgtggtaatgga
aattgcaatgtatctgtaagagctgcctggaaagacaatgcttgtttccaagaagatggt
tttccttatggaatatatttaaaagcagtcaatcttaccaatcattctagtctcttcaca
agatacagctactctctcttctggggtttccagcaaataagcactcttgctggaaaccaa
gtcccaagctactttctaggggaggtcttctttactatgggtatcactggcctggggctt
ttgctttttgcccttcttattggtaatatgcaaaatttccttcaagctcttggtaaaagg
aatttggaaatgacgctgagacggcgtgatgtggagcaatggatgagccatagacggttg
ccaaatggtataagaaagagggtgcgagaggctgaacggttcaactgggctgctaccaga
ggcgttaacgaagaattactctttgagaatatgcctgatgatcttcaaagagatataaga
cgacacctctttaaatttctcaagaaggtgagaatattttcgttgatggatgaatcaatc
ttagatgccatcagtgagaggctgaaacagaggacatacatagggaatagcacagtgttg
cacagcggaggtctagttgagaaaatggtattcattgtgagaggtgagatggagagcatt
ggagaagacggttctgttcttacattatcggaaggcgacgtttgtggcgaagaacttctc
acttggtgcctcaaacgcttttctgtaaaccctgatgggacgagaataaagatgccacca
aagggattggttagcaacagaaatgttaggtgtgtgacaaatgtggaagcgttttcgctg
agtatagcagatcttgaagacgtagcgagcttgttctcgagattcctaaggagccataga
gtccaaggagccataaggtatgagtctccttattggaggctacggcagattcaagtggct
tggagataccgaaggagacggcttcagagagtatacagtgctcagtctagttacatccgt
tag
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