Arabidopsis lyrata (lyrate rockcress): 9319586
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Entry
9319586 CDS
T01578
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
9319586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
9319586
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
9319586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
SNF2-rel_dom
ResIII
Helicase_C_2
zf-C2H2_7th_ZNF462
Motif
Other DBs
NCBI-GeneID:
9319586
NCBI-ProteinID:
XP_002885641
UniProt:
D7L524
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MDMTTCVARRTRSRTESYLNSILNRSKGITGEEDSLNSRTEKRRVNMRDACSPSPRKKKR
RRSKVGEDDDDDDVEFIRTDYPEGKRDDENVGSTSGNFESKSLDCSDFDVDDGNLGGEER
ISNFNPLSPDDDVVFVRTVLRENDHVEEDDNVGSASVISPRVCDFDVDGADLRGEEKTST
LDHLSPDDDDDVVFVGTVPGDVEDGNVGSGVCDILLDDVNLRGEEKTYESDEVVSLSFNS
DDEECGTDSGEEVSGEDRDSSEIDMNEDANDPSYNMEESSDPSCEESSDSDFVRSEDEEG
GTGDIAKGEKNPSEKVYYQKKSRSFRRKHNLEVINLLAKSIWESKDVFKEDICSGDKMAE
VDSREDGINRDSSSEKVNEQGKPREPRSFHRVREKNHLNGESFYGGENLCDGEETIHYST
EDSPPLNLRFGCEEPVLIEKTEEEKELDSLWEDMAVALTLEGMNSSTPAKNGDKLCSKGT
HDFVLDEEIGLKCLHCSYVAVEIKNISPAMVKYRPSVNDNKKCSDKKGDPLPNRLEFDAS
GPSSHDTPLEKTEGTVWRYVPGIKDTLYPHQQEGFEFIWKNLAGTTKLNELNSVGVKGSG
GCIISHKAGTGKTRLTIVFLQSYLERFPDSHPMVIAPASLMRTWEEEFRKWNANIPFYNM
NSPQFSGHEDVEAVSCLEGDRHHNSIRMVKLVSWWKQKSILGVSYPLYEKLATNKNAEGM
QVFRRMLVELPGLLVLDEGHTPRNQNSLIWKVLTEVRTEKRIILSGTLFQNNFKELSNVL
CLARPACKDTISSRLHELIKCSQEGEHGRVNEENRIVDLKAVIAPFVHVHEGDILQESLL
GLRDCVLVLNPPFQQKKILDRIDTSQSTFEFEHKLSAVSVHPSLYLCCNPTKKENLVIGP
ATLETLKKLRLKYKEGVKTKFLIDFIRISGTMKEKVLVYSQYIDTLKLIMEQLSLVFSWK
EGEEILFMHGKVEQRDRQHLIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVW
NPSVESQAISRAFRLGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTNEKDKP
INNEVDSEDRILDEMVRHEKLKHIFEKILYHPKESDMFTSFF
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggatatgactacttgtgttgctagaagaactcgttcaaggactgaatcttacttgaat
tcgattctcaatagatcaaaggggattactggagaagaggattcgttaaattcgaggacg
gagaagagaagagtgaacatgcgtgatgcttgttcaccgtctccgaggaagaagaaacga
cggcggagtaaggtgggtgaggatgatgacgacgacgatgttgaatttatcagaactgat
tatccagaaggtaagcgtgatgatgagaatgttggttctacttctgggaattttgaatcg
aaatcgcttgattgttctgattttgatgtggatgatggtaacttgggaggtgaagagaga
atttctaattttaaccctttatctccggatgatgatgttgtttttgttagaactgttttg
agagagaatgatcatgttgaagaggatgacaatgtgggttctgcttcggtgatttctcct
agggtttgcgattttgatgtggatggtgctgatttgaggggtgaggagaaaacttctact
ttggatcatttatctccggatgatgatgatgatgttgtttttgttggaactgttccggga
gatgttgaggatggcaatgttggttctggggtttgtgatattcttttggatgatgttaat
ttgaggggtgaggagaagacttatgagtctgatgaggttgtgagtctaagttttaattct
gatgacgaggaatgtgggactgattcaggagaggaagttagtggcgaagatagagattct
agtgagattgatatgaatgaagatgctaatgacccatcttataacatggaggaaagttca
gatccttcttgtgaggagagctctgatagtgatttcgttcgttctgaggatgaagagggt
ggtaccggagacattgctaaaggcgaaaagaacccaagtgaaaaagtatactaccaaaag
aagtcgaggagttttcgtaggaagcataacttggaagtaattaacctgctagctaaatct
atttgggagagcaaagacgttttcaaggaagacatttgctccggggacaaaatggcagag
gttgattctagagaagatggtataaatagggatagctcaagtgaaaaggtaaatgaacag
gggaaaccaagggaaccgaggagtttccacagggtgagggagaagaaccacttgaatggt
gagagtttttatggtggcgaaaatctatgtgatggagaagagacaatacactactcgaca
gaagattcacctccattaaacttgagatttggctgcgaggagcctgtgcttatcgagaaa
acagaagaggagaaagaattagacagcttgtgggaagatatggccgttgctctaacattg
gaaggaatgaactcatctactcctgctaaaaatggagataagctatgtagcaaagggacg
cacgactttgtcctggatgaggaaatcggtttgaaatgcctccactgttcgtatgtggct
gtcgagatcaaaaacatctcaccagctatggtcaagtatcgtcctagtgttaatgacaat
aaaaaatgtagtgataaaaagggtgaccctttacctaacaggcttgagtttgatgcttca
ggtcccagcagtcatgacacccctttggagaagacagaaggaactgtctggcgatacgtc
cctggcatcaaagatactttgtacccacaccaacaagaaggctttgaatttatttggaag
aacttagccgggacaacaaaacttaatgagttgaacagcgtaggggttaagggaagtggc
ggatgcattatttcgcataaggctggaactggtaagacgcgcttgaccatcgtttttctt
cagtcatacttagaacggtttccagatagccatcctatggtcatagctcctgcaagtcta
atgcgtacatgggaagaagaattcaggaaatggaacgcaaatattccattttataatatg
aatagtccgcagttctcagggcatgaggacgttgaagctgtctcatgtttagagggagat
aggcatcataattccatccgtatggttaagctagtttcgtggtggaagcagaaaagcatt
cttggagttagctaccctctgtatgagaagctcgcaacaaataagaacgctgaaggaatg
caagtgtttagaaggatgttggtagaattgccggggttgctggtccttgacgagggccac
accccgagaaaccagaatagtctcatttggaaagtgcttactgaagtcagaacagaaaag
cgtatcattctttcagggacactgttccagaataatttcaaggaactttctaacgtctta
tgcctggcaagaccagcttgtaaagatacgatttcgtcgaggctacatgaacttatcaag
tgcagccaagaaggagaacacggaagggtgaatgaagaaaatagaattgtggatcttaag
gctgtgattgccccttttgtgcatgtccacgaaggagacattcttcaagaaagccttcta
ggtctaagagactgtgttctggtgttgaacccgccttttcaacaaaagaaaattctggac
agaattgacacttctcaaagcacatttgaatttgagcacaagctttcagctgtttcagta
cacccatctctgtatttgtgctgcaatccgacgaaaaaggaaaacttggttattgggcca
gcaacattagaaactctgaagaagcttagacttaagtacaaggaaggtgtgaaaacaaag
ttccttatcgacttcatccgcatcagtggaaccatgaaagagaaagtgttggtgtatagc
caatacattgacactctaaagctgatcatggagcagctcagtttagtatttagctggaaa
gaaggggaagaaattctctttatgcatggtaaagttgaacaaagagacaggcagcatctg
atcgacaacttcaacaaaccagacagtggatctaaagttctactggcatcaacaaaagca
tgttccgagggtatcagtcttgttggcgcttcaagagttgtgattcttgatgttgtttgg
aacccttctgttgaaagccaagccataagtcgggctttcagacttggtcaaaagcgtgct
gtgttcatttaccatctcatggtgaaagacacatctgagtggaacaagtactgtaagcaa
agtgagaaacatcgcatatccgaactggtcttctcttctaccaatgagaaggataagccg
atcaacaacgaagttgattccgaagatagaatcctcgacgagatggttcgacacgagaag
ctgaaacacatctttgagaagatactttatcacccaaaagaatctgacatgtttaccagc
ttcttctga
DBGET
integrated database retrieval system
