Arabidopsis lyrata (lyrate rockcress): 9319590
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Entry
9319590 CDS
T01578
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
9319590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
9319590
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
9319590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
9319590
NCBI-ProteinID:
XP_020887939
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MQRQRSILSFFQKPSPATTQGLVSGDATSGGGGGVGGGLRLNVKDDASVRFAVSKSVDEV
RGTDTPPEKVPRRVLPSGFKTAESAGGGASSLFSNIMHKFVKVDDRECSGQRSREDVVPL
NDSSVCMKADDVIPEFRSNNGQTQERDHAFSFSGRVEDNIGVDDDVPGPETPGIRPSVSR
LKRVLEDGMTVKEDKVPVLDSNKRLKMLQDPVCGEKKEVNEGTKFEWLEPSRIRDANRRR
PDDPLYDRKTLYIPPDVFKKMSASQKQYWSVKSEYMDIVLFFKVGKFYELYEVDAELGHK
ELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRIEQLETSDQAKARGANTIIP
RKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELEKCSTVYGFAFVDCAALRFWVGSISD
DASCAALGALLMQVSPKEVVYDSKGLSREAQKALRKYTLTGSMAVQLAPVSQVMGDTDAA
GVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELINHLSRLKLEDVLKHGDIFPY
QVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVV
SINKRLDVVEEFTANSEIMQTTGQYFHKLPDLERLLGRIKSSVQSSASVLPALLGKKVLK
QRVKAFGQTVKGFRSGIDLLLALQKESNMMSLLCKLCKLPILVGNNGLELFLSQFEAAID
SDFPNYQNQDMTEENAETLTILIELFIERVTQWSEVIHTISCLDVLRSFAIAASLSAGSM
ARPVIFPESENTDQNQEIKGPILKIQGLWHPFAVAADGQLPVPNDILLGEDRNRSNSIHP
RSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGE
STFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFAT
HYHPLTKEFASHPRVTSKHMACAFKSKSDQAPRGCDQDLVFLYRLTEGACPESYGLQVAL
MAGIPNQVVETASDAAQAMKRSIGENFKSSELRSEFSSLHEDWLKSLVGISRAAHNNAAI
GEDDYDTMVCLWHEIRSSYCVPK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagagatcgattctgtctttcttccaaaagccctcgccggcgactactcag
ggtttggtttccggcgatgctaccagtggaggcggcggcggcgtcggaggaggattgcga
ctcaatgtgaaagacgacgcttctgtacgctttgctgtttcgaaatctgtggatgaggtt
agaggaacggatactccaccggagaaggttccgcgtcgtgttctgccgtctggatttaag
acggctgaatccgccggaggtggtgcttcgtcattgttctctaatattatgcataagttt
gtgaaggtcgatgatcgagaatgttctggacagaggagccgagaagatgttgttcccctg
aatgattcatctgtatgtatgaaagctgatgatgttattcctgaatttcgttccaataat
ggtcaaactcaagaaagagaccatgcttttagcttcagtgggagagtagaagataatata
ggagtagatgatgatgttcctggtccagaaacaccagggatacgtccaagtgtttctcgc
ttgaagcgagttttggaggatggaatgactgttaaggaggataaggttcctgtattggat
tctaataaaaggctgaaaatgcttcaggatccggtttgtggagagaagaaagaagtaaac
gaaggaaccaaatttgagtggcttgagccttctcgaatcagggatgctaatagaagacgg
cctgatgatccactttacgacagaaagaccttatacataccacctgatgttttcaagaaa
atgtctgcgtcgcaaaagcaatattggagtgttaagagtgaatatatggatattgtgctt
ttctttaaagtgggaaagttttatgagctgtatgaggtagatgcggaattaggtcacaag
gagcttgactggaagatgaccatgagcggtgtaggaaaatgcagacaggtcggtatctct
gaaagtgggatagatgaggcagtgcaaaagcttttagctcgtggatataaagttggacga
atcgagcagctagaaacatctgaccaagcaaaagccagaggtgctaatactataattcca
aggaagctagttcaggtattaactccatcaacagcaagcgagggtaacattgggcctgat
gctgtccatcttcttgctataaaagagatcaaaatggagctagaaaagtgttcaactgtg
tatggatttgcttttgttgactgtgctgccttgaggttttgggtcgggtccatcagcgat
gatgcatcatgtgctgctcttggagctttattgatgcaggtttctccaaaggaagtggta
tatgacagtaaagggctatcaagagaagcccaaaaggctctaaggaaatatacattgaca
gggtctatggcggtacagttggctccagtatcacaagtaatgggggatacagatgctgct
ggagttagaaatataatagaatctaatggatactttaaaggttcttctgagtcatggaac
tgtgctgttgatggtctaaatgaatgtgatgttgcccttagtgctcttggagagctaatt
aatcatctgtctaggctaaagctagaagatgtacttaagcatggagatatttttccatac
caagtttacaggggttgtctcagaattgatggccagacgatggtaaatcttgagatattt
aacaatagctgcgatggcggtccttcagggaccttgtacaaatatcttgataactgtgtt
agtcctactggtaagcggctcttaagaaattggatctgccatccactcaaagatgtagta
agcatcaataaacggcttgatgtagttgaagaattcacggcaaactcagaaattatgcaa
accaccggccagtattttcacaaacttccagacttagaaagactgctcggacgcattaag
tcaagcgttcaatcatcagcctctgttttgcctgctcttctggggaaaaaagtgctgaaa
caacgagttaaagcatttgggcaaactgtgaaagggttcagaagtggaattgatttgttg
ttggctctacagaaggaatcaaatatgatgagtttgctttgtaaactctgtaaacttcct
atattagttggaaacaatgggctagagttattcctttctcaattcgaagcagccatagat
agcgactttccaaattatcagaaccaagatatgacagaggagaatgctgaaactcttaca
atacttattgaactatttatcgaaagagtcactcaatggtctgaggtcattcacaccata
agctgcctagatgtcctgagatcttttgcaatcgcagcaagtctctctgctggaagcatg
gccaggcctgttatttttcccgaatcagaaaatacagatcaaaatcaggaaataaaaggg
ccaatacttaaaatccaaggactatggcatccatttgcagttgcagctgatggtcaattg
cctgttccaaatgatatactccttggtgaggatagaaaccgcagcaacagcattcatcct
cggtccttgttactgacaggaccaaacatgggtggaaagtcaactcttcttcgtgcaaca
tgtcttgccgttatctttgcccaacttggctgctatgtgccatgtgagtcttgcgaaatc
tcccttgtggatactatcttcacaaggcttggtgcatctgatagaatcatgacaggagag
agtaccttcttggtagaatgcactgagacagcgtcagttcttcaaaatgcaacacaagat
tcactagtaatccttgacgaactgggcagaggaactagtactttcgatggatacgccatt
gcatactcggtttttcgtcacctggtagagaaagtccagtgtcggatgctctttgcaaca
cattaccaccctctcaccaaggaattcgcgtctcacccacgtgtcacctcgaaacacatg
gcatgcgcattcaaatcaaaatctgatcaagcaccacgtggctgtgaccaagacctagtg
ttcttgtaccgtttaaccgagggggcttgtcctgagagctacggacttcaagtagccctc
atggctggaataccaaaccaagtggttgaaacagcatcagacgctgctcaagccatgaag
agatcaattggcgaaaacttcaaatcaagtgagctaaggtctgagttctcaagtctgcat
gaagactggctcaaatcattggtaggtatctctcgagccgcccacaacaatgccgccatt
ggcgaagatgactacgacactatggtttgcttatggcatgagatcagatcctcttactgt
gttcccaaataa
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integrated database retrieval system
