KEGG   Arabidopsis lyrata (lyrate rockcress): 9319772
Entry
9319772           CDS       T01578                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9319772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aly03041]
    9319772
Spliceosome [BR:aly03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    9319772
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_WDR19_1st WD_LRWD1 ANAPC4_WD40 Beta-prop_SCAP WD40_RFWD3 Beta-prop_SPT8 WD40_like Ge1_WD40 Nbas_N STELLO
Other DBs
NCBI-GeneID: 9319772
NCBI-ProteinID: XP_020889389
LinkDB
Position
Unknown
AA seq 359 aa
MCQTKLRETRIEIAKYSIKRAALRIQREKRRMDDPDEDINAKTNLALKHVKDMVLDXGDD
RPLTGCSLSRDGKILATCSLSGVTKLWEMPQVTNKIDVLKDHKEHATDVVFSPVDYDCLA
TASTDRTAKLWNIDGTLLQTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDINTGIEI
LSQGGHSRSVYGIAFQQDGALVASSGFDSLARVWDLRTGKSILVFQGHIKPVLSVDFSPN
GYHLASGGVDNQCRIWDLRMRKSLYIIPAHVNLVSQVKYEPQEGYFLATASYDMKVNIWS
GRDFSLVKSLVGHESKVSSLDIALDSSCIASVSHDRTIKLWTSSGNDEDKGRETMDIEL
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgtgtcaaacaaagcttagagagactagaatagaaattgccaaatattctataaagaga
gctgctctaaggattcagcgtgaaaagcgtcgaatggatgatccagatgaagatattaat
gctaagactaatttggctttaaagcatgttaaagacatggttcttgacnntggggatgat
cgtcctcttactggttgctccttgtcacgagatggaaaaatactcgcaacatgttctctt
agtggggttactaaattgtgggagatgcctcaagttacaaacaagattgatgtcttgaaa
gatcacaaagaacatgcaactgatgtagtgttctcgcctgtggattatgattgtctagca
actgcttctactgatcgaactgcgaagttgtggaatattgatggaacactcttacaaact
tttaaaggtcatttggatcggcttgcacgcattgcattccatccatcggggaaataccta
gggacaacgagttttgacaaaacatggagattgtgggatataaatacaggaattgagatt
ctttcgcaaggaggtcatagtcgtagtgtctacggaattgcatttcaacaagatggagca
ttagtagcttcttcgggttttgattcacttgcacgagtttgggatcttcgtactggtaag
agtattcttgtcttccaaggacatatcaaaccggttctctcagtggatttttctcctaat
ggctaccatttggcatctggtggtgtagataatcaatgccgtatttgggatctacgaatg
agaaagtcgttatacattataccagctcatgtgaaccttgtttctcaagtaaagtatgaa
ccacaagaagggtatttcttggctactgcctcatacgacatgaaagttaatatatggtca
ggtagagatttctcgcttgttaaaagcttagtaggacatgagtccaaagtctcatctcta
gatatcgctctagatagctcgtgtatcgcaagtgtttcgcatgaccgcaccatcaagctt
tggacaagcagtgggaatgatgaagacaaagggagagaaacaatggacatagagctctag

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