Arabidopsis lyrata (lyrate rockcress): 9319805
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Entry
9319805 CDS
T01578
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A isoform X1
KO
K07466
replication factor A1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9319805
03420 Nucleotide excision repair
9319805
03430 Mismatch repair
9319805
03440 Homologous recombination
9319805
03460 Fanconi anemia pathway
9319805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
9319805
03032 DNA replication proteins [BR:
aly03032
]
9319805
03400 DNA repair and recombination proteins [BR:
aly03400
]
9319805
Transcription factors [BR:
aly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
9319805
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
9319805
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
9319805
MMR (mismatch excision repair)
9319805
DSBR (double strand breaks repair)
HR (homologous recombination)
9319805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
9319805
NCBI-ProteinID:
XP_002883738
UniProt:
D7LA67
LinkDB
All DBs
Position
Unknown
AA seq
640 aa
AA seq
DB search
MPVSLTPNAITAINDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV
QLNDRVKSGQVEKGSIVQLIDYICSDVKGRKLIVVLNMETIVPHSETIGNPTIFGETDTE
AQKPLSAVGNIPPPNRVVFNEPTAQHSVNRAPPRGVNIQNPANSTPSFRPSVQPSYQPPA
SYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVYSFDLL
DSDGGEIRVTCFNAVADRFYDVTEVGKVYLISKGSLKPAQKNYNHLKNEWEIFLESTSTV
ELCPDEDGSIPRQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRIL
NLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQ
LFINPDFPEAHKLRTWFDHGGKDTASFSISRDTMPGGVSRNEIRKSVSQIKEEGLGRSDK
PDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRY
LLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYALKYELEKEEEFAEIVRDRLFHQYML
KLKIKEESYGDEQRVKMTVVKVDKMNYTSESKYMLDLLVR
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgagtttgactccgaacgcaatcacggcgataaacgacggcgacgtgaatttg
aagccgttgctacaggttttagaaatcaaaatgataggaagaagtcaagagagaagccaa
gagaggtatcgtttcctcatttccgatggtgtttcagctcaacatgctatggtcgcggtt
cagcttaatgatcgagtcaaatcaggacaagttgagaaaggatccatcgttcagctgatt
gattacatttgcagcgatgttaaaggccgcaagcttattgtggtgctgaatatggagaca
atagtaccacattctgaaaccatcgggaaccccacaatatttggagaaacagatacagaa
gcccagaagccgctttcagctgtgggtaatataccgcctccgaacagggttgtttttaat
gaaccaacggctcagcattctgttaatagagcacctcccaggggcgtaaacattcaaaat
ccagccaacagtactccaagtttcaggccatctgttcaaccttcatatcaaccgcctgca
agctacagaaatcatggacccataatgaagaacgaggctccagctcgagtcatccctatt
gctgctctcaatccataccaaggtcggtgggctattaaggctagagtaactgcgaaagga
gatatcagacgatataacaatgcaaaaggagacggaaaggtttactcgtttgatctgctt
gactctgatggaggggaaattcgggttacctgctttaatgctgttgctgaccgattctat
gacgttactgaggttggtaaggtatatttgatttcaaagggaagtttgaagcctgcacag
aaaaattacaaccacttaaagaatgaatgggaaattttcttggagtcaacatcgactgtg
gagctttgccctgatgaagatggctccataccaaggcagcagttctccttccgtcctata
agtgacattgagaacgccgagaacaataccatactcgatgtcattggagttgtgacttct
gtgaacccctcagtgccaatcttgagaaagaacgggatggaaacccataggcgaatcctg
aatctgaaggatgaatcgggaaaagctgtagaggtaacgctatggggagaattctgtaat
cgagatggtcggcaactggaagagatggttgattcagcttttcacccggttttagcaata
aaagctggaaaagtaagcgacttcagcgggaaatcagtggggacaatatcttcaacacag
ctcttcataaatccagatttccctgaagctcataaactacgaacctggttcgatcacggg
ggaaaagacactgcttccttctccatctccagggacactatgcctggaggtgtttccagg
aacgagataagaaaaagtgtttctcagatcaaagaggaaggtcttggaagatcagataag
cctgactggatcactgtgaaagcaaccatatcattcatcaaaacagatagcttctgttac
acagcttgtcctttgatgatcggagataaacaatgcaacaagaaggtaacacggtctgga
acaaacaggtggctttgtgaccggtgcaaccaagagtctgatgaatgcgactacagatac
cttcttcaggtgcagatacaagaccacactgggttgacttggataaccgcgtttcaagaa
acgggagaagaaatcatgggatgtccggctaagaagctttacgcattgaaatacgaattg
gagaaggaggaagagttcgcagagattgttagagacagactgtttcatcagtacatgttg
aagctaaagatcaaagaggaatcgtatggggatgaacaaagagtgaagatgactgttgtg
aaggtggataagatgaattatacatcagagagtaaatacatgcttgatttgctcgtaagg
taa
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integrated database retrieval system
