Arabidopsis lyrata (lyrate rockcress): 9319987
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Entry
9319987 CDS
T01578
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9319987
Spliceosome [BR:
aly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
9319987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_3
PPR_long
PPR_1
RPN7
Motif
Other DBs
NCBI-GeneID:
9319987
NCBI-ProteinID:
XP_002885984
UniProt:
D7L4G8
LinkDB
All DBs
Position
Unknown
AA seq
841 aa
AA seq
DB search
MIVTGACDFSSSLSVASSSSSAVSVTTFNISSLSSLSSNPNIIINSSSTLLRSLSFSLIR
HRSSYSRRSLRCLSIHTVHGNKTQFFSHSSTRTPPLFTANSAAQRSGTFVEHLTGITESK
EGSSEANDFGDVESARNDIRNVTTRRVETEVEVRELEELPEEWRRSKLAWLCKEVPTHKA
VTLVRLLNAQKKWVRQEDATYIAVHCMRIRENETGFRVYRWMTQQNWYRFDFGLVTKLAD
YLGKERKFTKCREVFDDIMNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQL
GGYKPRLSLHNSLFRALISKRGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSC
QEEVDKDRINFLREEMMKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPS
QAFVYKMEAYSKVGDFAKALEIFREMEKQLGGATVSGYHKIIEVLCKVQQVEFVETLLKE
FEESGKKPLLPSYIEIAKMYFDLGLHEKLEMAFVECLEKCQPSQTIYNIYLDSLVKIGNL
EKAGDVFNEMKNNGTINVNARSCNNLLKGYLDSGKQVQAERIYDLMRMKKYEIEPLLMEK
LDYILSLKKKEVKKPLSMKLSKEQREVLVGLLLGGLQIESDKEKKSHMIRFEFRENSQAH
LILKQHIHDQFREWLHPLSNFQEDIIPFEFYSVPHSYFGFYAEHFWPKGQPEIPNLIHRW
LSPHSLAYWYMYSGFKTSSGDIILRLKGSLEGVEKVVKALRAKSMECRVKKKGKIFWIGL
QGTNSALFWNLIEPYVLEDLKDHLKPPSESIGNASTQNQKLDSTKPVEEIHHYSLSSSLQ
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgattgttaccggagcttgcgacttctcttcatcactctccgtcgcctcttcctcctcc
tccgccgtctccgtcacaaccttcaacatttcctctctctcctctctctcctctaaccct
aacatcatcatcaattccagctcaactctcctccgttccctttccttctccctcatccgc
caccgcagcagctactctcgtcgctctctccgctgtctctctatccacacagttcatgga
aacaaaacccaattcttctctcactcttctacgcgaactccaccacttttcacggctaat
tccgctgctcaacgaagcgggactttcgtcgaacaccttacaggcattacagaatcgaaa
gaaggaagcagcgaagccaacgatttcggtgatgtagagtctgctaggaacgatataagg
aatgttacgactcgtagagtagagacggaggttgaagttagagaattggaagagttgccg
gaggaatggcgacggtcgaagctagcgtggctgtgtaaagaagttccgacgcataaggcc
gtgacgcttgtgaggctattgaatgctcagaagaaatgggttcgtcaagaagatgctact
tacatcgctgttcattgtatgcggattcgtgagaacgaaactggattcagggtgtataga
tggatgacacagcagaattggtaccggtttgatttcgggttagtgacgaagctagctgat
tacttgggcaaagaacggaaatttacgaaatgccgagaggtatttgatgatattatgaat
caagggcgtgttcctagtgaatctacatttcatattcttgtagttgcatatctaagtagc
ttatcagtcgaaggctgtctcgaggaagcgtgtagcgtttacaatagaatgattcaactt
ggaggttacaaaccgcgtcttagtctacataattctttatttagagctttgataagcaaa
cgaggagggattttgaatgatcagcttaagcaagcagagtttatctttcacaatgttgtg
acaacagggcttgaggttcagaaggatatctatagcggattaatctggctgcatagttgc
caagaggaagttgacaaagacaggattaactttctaagagaagagatgatgaaggcaggt
tttcaggagagtaaagaagttgtggtctcgttacttagagcttatgcaaaggagggaggt
gtggaagaagttgagaggacgtggcttgaattgcttgatttagattgtggtataccttct
caggcgtttgtgtacaaaatggaagcttattcgaaagtaggtgattttgcgaaagctttg
gagatattcagggagatggagaagcagttaggtggtgcaactgtgtctggttaccacaaa
atcattgaggttctatgtaaagtccagcaagtggaatttgtggaaactctcttgaaggag
tttgaagaaagcgggaagaagccgcttctaccatcatacatcgaaatagccaaaatgtac
ttcgatttgggtttacatgagaagttggagatggcttttgttgagtgcttggagaaatgc
caacctagccagactatatataacatatatctggattcattggttaaaatcggcaacctt
gagaaagcaggggatgtcttcaatgaaatgaaaaacaacgggacaatcaatgtgaatgct
agatcgtgcaacaaccttttaaaaggatacttagattctggaaaacaagtgcaggcagag
agaatatatgatctgatgagaatgaagaaatacgaaatcgaaccattgcttatggaaaag
cttgattacatcctgagcttgaagaaaaaagaggtgaagaaaccgttaagcatgaagcta
agcaaagaacagcgcgaggtattggtaggtttgctgttaggtggcttgcaaatcgaatca
gacaaagagaagaagagccacatgatcagatttgaattcagagagaattctcaggctcat
ctaattcttaaacaacacatacatgaccagttccgcgagtggttgcatcctttaagcaat
ttccaagaggatattataccgttcgaattctactccgttccccattcatacttcgggttt
tacgccgaacatttctggcccaagggtcaaccagagattccaaacctgattcatcggtgg
ctctcaccacactcactcgcgtattggtacatgtacagcggctttaaaacatcatcagga
gacattatcttgagattgaagggaagtctagaaggtgttgagaaggtagtaaaggctctt
agagccaaatctatggaatgtcgagttaagaagaaaggaaaaatcttttggattggactt
cagggaacaaactcagctttgttctggaacctaatagagccttacgtgttagaggacttg
aaagatcatttgaaacctccttctgaatcaataggcaatgcatcaacacaaaatcaaaaa
ctagattcaaccaaaccagttgaagaaattcatcattattcattaagttcttctctacaa
ttgtaa
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integrated database retrieval system
