KEGG   Arabidopsis lyrata (lyrate rockcress): 9320059
Entry
9320059           CDS       T01578                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    9320059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9320059
   03041 Spliceosome [BR:aly03041]
    9320059
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     9320059
Spliceosome [BR:aly03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    9320059
SSDB
Motif
Pfam: WD40_Prp19 WD40 WDR55 EIF3I WD40_WDHD1_1st WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_Nup120_160 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_NWD2_C Beta-prop_WDR19_1st PKD
Other DBs
NCBI-GeneID: 9320059
NCBI-ProteinID: XP_020888902
LinkDB
Position
Unknown
AA seq 367 aa
MYGDATNWNEDEYRESILKEREIQTRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLK
SLVSQSASFGYSKGQDVMVAEPERVVRAHDGPAYDVKFYGEEEDALLLSCGDDGRVRGWK
WREFAESEMSLHFQENHVKPLLELTNPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAGD
SCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIG
SQDKKSRLRVSSMALDGSESWLVCGQGKNLALWNLPASECVSTISIPAHVQDVMFDEKQI
LTVGAEPVLRRFDLNGALLSQIPCAPCSVFSISLHPAGVVAVGGYGGLVDVISQFGSHLC
TFRSSSL
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgtacggagacgctactaactggaacgaagatgagtatagagaatcaatattgaaggag
cgagagatacaaacacgtaccgtattcagaaccgcctgggctcctccggcgagaatctct
aatccagacgcatttgttgtcgcttccagcgatggaactttagctttccattctctaaaa
tcgcttgtgtctcaatcggcgagttttggctactcgaaaggtcaggatgttatggttgct
gagcctgagagagtggttagggcacatgatggtccagcttatgatgttaagttctatggt
gaagaagaagatgctttgctacttagttgtggtgatgatggtagagttaggggatggaaa
tggagagaatttgctgaatcagagatgtctcttcattttcaagagaatcatgtgaagcca
ttgcttgaattgactaatccacaacacaaaggtccttggggtgctctttcaccgatgcct
gagatcaatgccatgtctgttgatcctcagtcaggcagtgtatttacagcagctggtgat
tcttgcgcatattgttgggacgtggagagtggtaaaatcaaaatgaccttcaaggggcat
tcagactatttgcatacagtagtttctcgtagttctgcaagtcagatattgacgggttca
gaggatgggactgcgagaatctgggattgcaaaacggggaaatgtgttaaagtaattggt
tctcaggataaaaagtcccgccttcgtgttagttcgatggcccttgatggaagtgaaagc
tggttggtttgtggacagggcaaaaatttagctttatggaatcttcctgcctcagaatgc
gtatcaacaatatccatccctgcacatgtacaggatgtgatgtttgatgaaaagcaaatt
ttgactgtaggagcagaaccagttctaagacgtttcgacttaaatggagctttgctttct
caaattccctgtgctccttgttcagtattttccatttccttgcatccagcaggagtagtt
gctgtgggaggttatggcggtcttgttgatgtcatctctcaattcggaagtcatctctgc
acatttcgtagcagctcattgtga

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