KEGG   Arabidopsis lyrata (lyrate rockcress): 9320059
Entry
9320059           CDS       T01578                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013  Nucleocytoplasmic transport
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9320059
  09122 Translation
   03013 Nucleocytoplasmic transport
    9320059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9320059
   03041 Spliceosome [BR:aly03041]
    9320059
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     9320059
Spliceosome [BR:aly03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    9320059
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WDR55 Beta-prop_WDR41 EIF3I WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_ACSF4 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_Nup120_160 Beta-prop_VPS8 NBCH_WD40 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_NWD2_C Beta-prop_Aladin PKD
Other DBs
NCBI-GeneID: 9320059
NCBI-ProteinID: XP_020888902
LinkDB
Position
Unknown
AA seq 367 aa
MYGDATNWNEDEYRESILKEREIQTRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLK
SLVSQSASFGYSKGQDVMVAEPERVVRAHDGPAYDVKFYGEEEDALLLSCGDDGRVRGWK
WREFAESEMSLHFQENHVKPLLELTNPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAGD
SCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIG
SQDKKSRLRVSSMALDGSESWLVCGQGKNLALWNLPASECVSTISIPAHVQDVMFDEKQI
LTVGAEPVLRRFDLNGALLSQIPCAPCSVFSISLHPAGVVAVGGYGGLVDVISQFGSHLC
TFRSSSL
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgtacggagacgctactaactggaacgaagatgagtatagagaatcaatattgaaggag
cgagagatacaaacacgtaccgtattcagaaccgcctgggctcctccggcgagaatctct
aatccagacgcatttgttgtcgcttccagcgatggaactttagctttccattctctaaaa
tcgcttgtgtctcaatcggcgagttttggctactcgaaaggtcaggatgttatggttgct
gagcctgagagagtggttagggcacatgatggtccagcttatgatgttaagttctatggt
gaagaagaagatgctttgctacttagttgtggtgatgatggtagagttaggggatggaaa
tggagagaatttgctgaatcagagatgtctcttcattttcaagagaatcatgtgaagcca
ttgcttgaattgactaatccacaacacaaaggtccttggggtgctctttcaccgatgcct
gagatcaatgccatgtctgttgatcctcagtcaggcagtgtatttacagcagctggtgat
tcttgcgcatattgttgggacgtggagagtggtaaaatcaaaatgaccttcaaggggcat
tcagactatttgcatacagtagtttctcgtagttctgcaagtcagatattgacgggttca
gaggatgggactgcgagaatctgggattgcaaaacggggaaatgtgttaaagtaattggt
tctcaggataaaaagtcccgccttcgtgttagttcgatggcccttgatggaagtgaaagc
tggttggtttgtggacagggcaaaaatttagctttatggaatcttcctgcctcagaatgc
gtatcaacaatatccatccctgcacatgtacaggatgtgatgtttgatgaaaagcaaatt
ttgactgtaggagcagaaccagttctaagacgtttcgacttaaatggagctttgctttct
caaattccctgtgctccttgttcagtattttccatttccttgcatccagcaggagtagtt
gctgtgggaggttatggcggtcttgttgatgtcatctctcaattcggaagtcatctctgc
acatttcgtagcagctcattgtga

DBGET integrated database retrieval system