Arabidopsis lyrata (lyrate rockcress): 9320085
Help
Entry
9320085 CDS
T01578
Name
(RefSeq) WD-40 repeat-containing protein MSI2
KO
K10752
histone-binding protein RBBP4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9320085
03083 Polycomb repressive complex
9320085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9320085
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
9320085
Histone modification proteins
HAT complexes
HATB complex
9320085
HDAC complexes
Sin3A-HDAC complex
9320085
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
9320085
PRC2.2
9320085
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
9320085
Heterochromatin formation proteins
Other heterochromatin formation proteins
9320085
Chromatin remodeling factors
NuRD complex
9320085
NuRF complex
9320085
NuRF complex (fruit fly)
9320085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
Beta-prop_EML
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_SCAP
MIOS_WD40
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
Beta-prop_RIG_1st
Cytochrom_D1
Beta-prop_DCAF4
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
9320085
NCBI-ProteinID:
XP_002886076
UniProt:
D7L872
LinkDB
All DBs
Position
Unknown
AA seq
415 aa
AA seq
DB search
MADEGKEDTGMDQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPSPYAADPYF
GVHKLILGTHTSGSAQDFLMVADVVTPTPNGEPGLGGPNQDPIIPKVEIRQKIRVDGEVN
RARCMPQKPTLVGAKTSGCEVFLFDYAKHAATPQTSECDPDLRLVGHDKEGYGLSWSPFK
EGYLLSGSQDKKICLWDVSATPQDKVLNAMFVYEGHESSIADVSWHMKNENLFGSAGEDG
RLVIWDTRTNQMQHQVKIHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVM
SSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHG
GHKAKISDFAWNENEPWVIASVAEDNSLQVWQMAESIYRDENDAEDIKEDITQQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaaggtaaggaggatacgggaatggatcaagtggaggaagatttctcagtg
tggaagaagaacacaccatttctctacgaccttttgatctctcacccactcgaatggcca
tctctcaccgtccattgggttccatcgacgccgagtccttacgcggcggacccttacttt
ggtgtccacaagcttatactcgggactcatacttccggtagtgctcaagatttcctcatg
gtcgccgacgtcgttaccccgacaccaaacggtgaacctgggttaggcggccctaatcag
gatcctattattcctaaggtggagattagacagaaaatacgtgttgatggagaagtgaac
agagcgcggtgcatgcctcaaaagccgacgcttgtgggtgcaaagacaagtggctgtgaa
gtgtttttgtttgattacgccaaacatgctgcaacaccacaaacgagtgagtgtgatcct
gatctgaggttagtaggacatgacaaggaagggtatggactgtcttggagtcctttcaag
gagggttatcttctgagtggttcacaggataagaagatctgtctttgggatgtttcagct
acaccgcaagataaggttttgaatgcaatgtttgtgtatgagggacatgaaagttctatc
gcagatgtatcatggcacatgaagaacgagaacctctttgggtctgcgggtgaggatggc
cgattggtgatatgggacacacggacaaaccaaatgcaacaccaagtgaaaattcacgag
agagaggtcaactatctatctttcaatccgtttaacgaatgggtattggccactgcttcc
tcagactccactgttgccttgtttgacctccggaagcttaatgcgccattacatgtcatg
agcagccatgagggagaggttttccaagtggagtgggatcctaaccatgaaacagtactc
gcatcttcaggggaggacaggaggctgatggtctgggacctgaacagggttggagaagag
cagcttgagatagagttggatgcagaagatggtccaccagagttactcttctctcatgga
ggccacaaggctaagatatcagactttgcttggaacgaaaacgagccttgggtcattgca
agtgtagccgaagacaatagtcttcaggtgtggcagatggcggaaagcatctatcgcgat
gaaaatgatgctgaggacatcaaagaagatattacacaacagtcataa
DBGET
integrated database retrieval system
