Arabidopsis lyrata (lyrate rockcress): 9320087
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Entry
9320087 CDS
T01578
Name
(RefSeq) pre-mRNA-splicing factor syf2
KO
K12868
pre-mRNA-splicing factor SYF2
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9320087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9320087
Spliceosome [BR:
aly03041
]
Complex B
Other components
Prp19-related factors
9320087
Complex C
9320087
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYF2
Motif
Other DBs
NCBI-GeneID:
9320087
NCBI-ProteinID:
XP_020887486
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
MVTERRVHPDCINASNPYHECVEYCFKKIAEAKARFEKQNSGLATGDGRGYPNAKVHEQT
REPLDDKRIEEDSSEEEEEEEDNQEPQVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGS
EKKKMEAPTETKGISKQKWLEGRKKKIGKLLDANGLDMTKAYMLDTQETAETKYKKWEKE
PTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQD
KIDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL
ERGTALPD
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggttactgagagaagagtgcatccggactgtatcaacgcttcaaatccttatcacgag
tgtgttgagtattgctttaagaaaatcgctgaagcaaaggccagattcgagaagcagaat
tctggattagctactggtgatgggcgtggttatcctaatgctaaagttcacgagcagacg
agggagccactcgatgataaacgaatagaggaagatagttcagaagaagaagaggaggaa
gaggataaccaagaacctcaagtagacgtgactcaacttacagggaggcagaagaagttg
tttgagttgagacttaagatgaatgaagcaagaaaatccaatcagacggatgtcgggagt
gaaaagaagaaaatggaagcaccaacagagacaaaaggaatctcaaaacagaaatggttg
gaggggaggaagaaaaagattgggaaacttctcgatgctaatggtttagatatgacaaag
gcttatatgctcgatactcaagaaacagcagaaacaaaatacaaaaaatgggaaaaggaa
cctacgcctgctggttgggatgtctttaaccagaagacattatacaacgcatataagaaa
cggacaaagaacattcaggttgatctagaggagtataacagaatgagagcagctgatcca
gagttttaccgtgaggcctcaagcttgcaatatgggaaggctccaaaaacttcgcaagat
aagatagataagatggcaaaagagctcttagacagagagcaaaagcgacaagagtttagc
aggaggagaaagttcagggaagagaaggatattgattccatcaacgacagaaacgagcat
ttcaacaagaaaatcgagcgtgcatttgggaaatacacgctggagatcaaaaacaacttg
gaacgaggaactgcattacccgactaa
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