Arabidopsis lyrata (lyrate rockcress): 9320280
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Entry
9320280 CDS
T01578
Name
(RefSeq) transmembrane E3 ubiquitin-protein ligase 1
KO
K23788
transmembrane E3 ubiquitin-protein ligase [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9320280
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9320280
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9320280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_5
zf-RING_11
DUF2921
zf-C3HC4_3
zf-RING_16
zf-C3HC4
zf-ANAPC11
zf-RING_UBOX
PHD_NSD
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
9320280
NCBI-ProteinID:
XP_020888492
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MNNLGNFGVWGLGFFSLSIWFAVLQQANGLRPIRETARSWGDEWRFGKKEKSGAGPFSAW
NITGTYRGSWNFLDTVNSSSKFPDFRKESGNSVIELVTSPTKITGVHYVQGAVVFHDVFD
NEHNVGGAQIKVEGVYIWPFRQLRLVANSGKKGDSGLEDDYLLSNPYHLLGIFSSQVFQE
SPRDRILKQKTSPIYEMEKHCNIEIAAQISQSASSENNGDKDRYHIEGLMESPAVDDDGD
CFSPLSLNATSINVEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIVMI
GQQAIMDSYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLSIWKATRPSTSG
EGWETMRRELSFLYSRFYGILLGGILLMYEFHNYMRPILLLMYSFWFPQIVANVVRDSRK
PLHPYYILGMTVTRLAIPLYVFGCPKNFMRVEPSKAWCVSLCAFMGFQAAVLLLQHYFGS
RCFVPRKMLPEKYSYYRRLDHNVNRSRDCVICMTTIDLRHRINDCMVTPCEHIFHSGCLQ
RWMDIKMECPTCRRPLPPA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaataatctggggaatttcggggtttggggattagggttcttctccttatcgatttgg
tttgcggttttgcaacaagctaatggactcagacccattagggagactgctcgatcctgg
ggcgatgagtggcgctttggcaagaaagaaaaaagcggagcaggaccgttttccgcatgg
aacataacaggaacatatagaggctcatggaactttctagatactgtaaatagctcttca
aagttcccagatttcagaaaagaaagtggtaactctgtcattgagttagtgacaagtcca
acaaaaataactggtgtgcattatgttcagggtgcagttgttttccatgacgtatttgac
aatgaacacaatgtgggtggtgcccaaattaaagttgaaggtgtatatatttggcccttt
agacagctccgtcttgttgctaacagcggaaagaagggtgattcaggactagaagacgat
tatcttctctccaacccctatcatctgctcggtattttttcctcccaagtatttcaagaa
tctccaagagacagaatattgaaacagaaaacttctccaatatatgagatggagaagcac
tgcaatatcgaaatagcagcccaaatatcccaaagcgcttctagtgaaaacaatggggac
aaagatcgttatcatatcgaaggattgatggaaagtcctgcagtagatgatgacggagat
tgtttttcgccattgtcgctgaatgcaacctccataaacgttgaagtctactataacaaa
gctgtgaactatacattgatggtcacttttgtctcgttcctccaggttcttttattgatc
cggcaaatggagcacagtaacacacaatccggtgctgcaaaggtctctatagtaatgatc
gggcaacaagccatcatggattcttatttatgccttttacatctcacagctgggatttta
gttgaatccctttttaacgcttttgcaacagctgcgttcttcaaatttgtagtgttttcg
atatttgagatgaggtatcttctgtccatatggaaagcaacccggccttcaaccagcggt
gagggctgggaaacaatgaggcgtgagctctcctttctgtacagccgtttctatggtatc
cttcttggaggcatattgttaatgtatgagttccacaactacatgcggccgatcctccta
ctcatgtactcgttttggtttccccagatagttgcaaacgttgttcgtgattctcgaaag
cccctgcatccttactatatcctggggatgactgttacacgacttgctataccattgtat
gtttttggttgcccgaagaacttcatgcgtgtagagcccagcaaggcctggtgtgtaagc
ctgtgcgcattcatggggtttcaagctgctgttcttcttcttcagcattatttcgggtct
cgttgctttgtccctcggaagatgctccctgagaaatacagctactacagaagattggat
cataatgtaaaccgaagcagggactgcgtaatctgcatgaccacgattgatctcagacac
cgtattaatgattgcatggtaacgccgtgtgagcatatattccactcgggttgcttacag
agatggatggatataaagatggagtgcccaacatgtcgtcgcccacttcctccagcttaa
DBGET
integrated database retrieval system
