Arabidopsis lyrata (lyrate rockcress): 9320816
Help
Entry
9320816 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9320816
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9320816
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
Helicases
9320816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
T4SS-DNA_transf
P-loop_SecA
UTP25_NTPase-like
Motif
Other DBs
NCBI-GeneID:
9320816
NCBI-ProteinID:
XP_020887507
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MEKSSYFLFGGTNFNKKKFAPDFAKFKNCTEDDDSNKKVNFFVEEEDTEEQKEKVVVFSK
KRKRRSSNSVPVEGFDVFKSSKKALAKGKAEEGNTKNDILEDPKKELNRQIERDALSRKQ
YNIHVSGNNIPPPLKSFAELSSRYGCEGYILGNLAELGFKEPTPIQRQAIPILLSGRECF
ACAPTGSGKTVAFICPMLIKLKHPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIR
LMTKPLVKTADFSKLRCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQ
IDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAG
TEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENA
VDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAIT
FYTEQDVPFLRNIANMMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTQPKADKNDKDV
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaagctcctattttttgtttggtggaacaaacttcaataagaagaagtttgct
ccagattttgctaagtttaagaattgtacggaggatgatgattccaataagaaagtgaac
ttctttgtggaagaagaggacactgaagagcagaaggagaaagttgttgtgttctctaag
aagaggaaacgaagatcttctaattccgtgccagttgaaggatttgatgtgttcaagagc
tcaaagaaggcacttgctaaaggtaaagcagaagaaggaaacacaaagaatgatatttta
gaagatcccaagaaggaacttaatcgtcaaatagagcgagatgctttgtcgaggaaacag
tataacattcatgtttccggtaacaatattccacctccgcttaaaagctttgcagagtta
tcatcaaggtatggctgtgaaggatatatattaggcaatttggctgaactaggatttaaa
gagcctacccccatccaaagacaggctattccaattctcctatcgggtcgtgaatgcttt
gcctgtgctccgactgggtcaggaaaaaccgttgcttttatttgtcccatgcttataaaa
ctcaagcacccttcaacagatggaataagagcagttatcctttctcctgctcgggaactg
gctgcccaaacagctagagaaggaaagaaacttattaaaggaagcaacttccacattaga
ttgatgactaaacctcttgtcaaaacagctgacttctcaaagctgcggtgtgatgttctc
atatcaacgccgatgcggctgaaaagagcaatcaaggctaaaaagattgacttaagcaag
gttgagtaccttgtccttgatgaatctgacaagctgtttgagcagagcttgttaaagcag
atagattgtgtggttaaggcttgttcaaacccttcgatcatacgttcattgttcagtgct
actttgcccgattctgttgaggaacttgcacgttccataatgcatgatgctgttcgtgtg
atcattggccgaaagaacacagcgtctgaaaccgtcaagcaaaagctggtttttgctgga
actgaagaagggaaacttcttgctcttcgccaaagctttgcagagagtcttaatccaccg
gtactgatctttgtacaaagcaaagaacgagcaaaggaactctatgatgaactgaaatgt
gaaaacatcagagccggggtcatccattccgatctccctccgggagagcgggaaaacgca
gttgatcaattcagagcgggcgaaaaatgggttttgatagctactgatgtgattgctaga
ggtatggatttcaaaggcatcaactgcgtgataaactatgatttcccagattcagcttct
gcatacatccacaggattggtcggtctgggagagcgggaaggagcggagaagcgataact
ttctacacggaacaagatgtacctttccttaggaacatagccaacatgatgatgtcatca
ggctgtgaggttccgtcgtggatcatgtctttgaagaagaagaagtggaggaagcatagg
ccgagacgtgattctatatctactcaaccaaaagccgataaaaacgataaagatgtgtaa
DBGET
integrated database retrieval system
