Arabidopsis lyrata (lyrate rockcress): 9320942
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Entry
9320942 CDS
T01578
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9320942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9320942
03041 Spliceosome [BR:
aly03041
]
9320942
03036 Chromosome and associated proteins [BR:
aly03036
]
9320942
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
9320942
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
9320942
Complex B
9320942
Complex C
U2 SnRNP specific factors
9320942
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
9320942
TFTC complex
9320942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
9320942
NCBI-ProteinID:
XP_020888201
LinkDB
All DBs
Position
Unknown
AA seq
1371 aa
AA seq
DB search
MAAPEDESSAQSQSSSATAAPTPPPSSSSSSAGDHYLAKCILRPSVVLQVAYGYFRSLSS
RDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIKDLAVIPQSSKLYSNSLQMGKDLLAV
LSDSGNLSFLSFSNEMHRFSPIQHVQLSTPGNSRIQLGRMLTIDSSGLFLAVSAYHDRFA
LFSLSTSSMGDIIHERISYPSEDGGNGSSVQAISGTIWSMCFISKDFNDSESKEYAPVFA
IVINRIGSLMNELALFRWNVKEESMCLISEYVEAGALAHSIVEVPHSSGFAFLFRIGDAL
LMDLRDPQNPCCLFRTSLDLVPASLVEEHFVEESCRVQDGDDEGFNVAACALLELSDHDP
MFIDTESDIGKLSSKHVSSWTWEPENNHNPRMIICLDDGEFYMFELIYEDDGVKVNLSEC
LYKGLPCKEILWVEGGFLATFAEMADGTVFKLGSEKLHWMSSIQNIAPILDFSVMDDQNE
KRDQIFACCGVTREGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLS
FVEETRVLSVGLSFKDVTDSVGFQSDVCTLACGLVADGLLVQIHQDAIRLCMPTMDAHSD
GIPVSSPFFSSWFPDNVSISLGAVGQNLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRV
TLQYEVSCISVPQKHIGKKRSCASSPDNSCKAAIPSGMEQGYSFLIGTHKPSVEVLSFSE
DGVGVRVLASGLVSLTNTMGAVISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWPLFSN
ASGLNCPDYFSYCKEEMDIVVGKKDNLPINLLLIATRRIGITPVFLVPFSDSLDSDIIAL
SDRPWLLQTARQSLSYTSISFQPSTHATPVCSSECPQGILFVSENCLHLVEMVHSKRRNA
QKFHLGGTPRKVIYHSESKLLIVMRTDLYDTCTSDICCVDPLSGSVLSSYKLKPGETGKS
MELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRLIILCLEHTQNSDSGSMTICSKAG
SSSQRTSPFRDVVGYTTEQLSSSSHCSSPDDNSYDGIKFDEAETWQLRLASATTWPGMVL
AICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRD
GVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILSCQDHSEFEYS
SPESNLNLNCAYYMGEIAMAIKKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGS
IFVFAPISSEEYELLEAVQAKLGIHPLTAPVLGNDHNEFRGRENPSQATKILDGDMLAQF
LELTNRQQESVLLTPQPSPSTSKASSKQRSSPPLMLHQVVQLLERVHYALH
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccggaggatgaatcttccgctcagtctcaatcatcctctgccacggcggct
cctacgcctcctccgtcctcttcttcttcctccgccggggatcattacctagctaagtgc
atcctccgccccagcgtcgttctccaggttgcttatggctacttccgctccctttcctcc
cgcgacatagttttcggcaaggagacttgcatagaattggtggttattggtgaagatggg
attgttgaatcggtgtgtgaacagtatgtatttggaacaattaaggatttggctgtcata
cctcagagtagtaagctatattcgaatagtttgcagatgggaaaagaccttctggctgtt
ctttctgactctggaaacctctcatttctctcatttagcaatgaaatgcacaggttctcg
cccatacaacatgttcaactttctactccaggtaactcaaggattcaactcggaagaatg
ctcacaatagattccagtggtctctttcttgctgtcagtgcgtatcatgatcgttttgct
ctgttttccctctcaacatcgtctatgggtgatattattcatgagaggatttcttatcct
tctgaagacggagggaatggtagctctgtacaagcaatatctggtactatttggagcatg
tgtttcatttctaaagattttaatgattccgaatccaaggagtatgctcctgtttttgcc
attgttataaataggattgggtctctcatgaatgagctggctttgtttagatggaatgtc
aaagaggaatccatgtgtttaatatcagagtatgttgaagctggggctctggcacatagt
attgtcgaagttcctcactcctctggatttgcctttctgtttaggattggtgatgccctc
ttaatggatcttagagatcctcaaaacccttgctgtctgtttaggacatccttagatctt
gttcctgcttcactagtggaagagcattttgtcgaagagtcgtgtagagtacaagatgga
gacgatgagggttttaatgttgctgcatgtgctttgttagagctcagtgatcatgatccc
atgttcatagatactgaaagtgacattggaaagttgagttctaagcatgtctcttcatgg
acttgggagccggaaaataatcataatcctcggatgattatatgcttagacgatggtgaa
ttttacatgtttgaactcatatatgaagatgatggggttaaagtaaatctatcagagtgt
ttatacaaaggtttaccatgcaaggaaattttatgggtcgaaggtggattcttggctact
tttgcggagatggcagatggaacagttttcaaattgggatctgagaagctacattggatg
agttccatacaaaatattgctccaatcttggatttttcggttatggatgaccagaatgag
aaacgagaccaaatatttgcttgctgtggtgtaacccgtgaaggctctctgagaattatt
cgtagtggcattaatgtagaaaaacttctgaaaaccgcgcctgtttatcaaggaataact
ggtacttggactgttaaaatgaagcttactgatgtataccattcatttcttgttttgtca
tttgttgaggagaccagggttttatcagttggattaagttttaaagatgtcactgattca
gttggtttccagtctgatgtttgcaccttggcatgtgggcttgttgctgatggtttgttg
gttcagattcaccaagatgcaataaggctgtgcatgcccaccatggatgctcattctgat
ggtattcctgtttcttcaccatttttctcgtcgtggtttccagacaatgtcagtatcagc
ttgggggcagttggtcaaaatttgatagttgtctctacgtctaacccttgtttcttgtct
atccttggggtcaaatcagtatcatctcaatgctgtgaaatctatgaaattcaacgagta
accttgcagtatgaagtttcctgcatctcagttcctcaaaaacatattggaaaaaagaga
tcctgtgcttcttcgccggataatagttgcaaagctgcgattccttctggtatggagcaa
ggctattcatttttgattggcacacataagccttctgttgaagtcctgtccttctcagaa
gatggtgttggtgttcgagtccttgcttctgggttggtatcgctaacaaatacaatggga
gctgttattagtggatgcattcctcaagatgtaagactcgtgttagttgatcaactttat
gtcctttctgggttgagaaatgggatgcttctccgttttgagtggccccttttttcaaat
gcatccgggttgaattgtccagattattttagttactgtaaagaagaaatggacattgtt
gtgggcaaaaaagacaatttacccatcaaccttctattaattgctacccgacgcattggc
atcacacctgttttcttggttccgttcagtgattcactggattcagacatcatagctctt
agtgacaggccatggttgttacaaacagctcgacaaagcctttcttatacttccatctca
ttccaaccttctactcatgcaactcctgtatgctcgtctgaatgccctcaaggaattctt
tttgtttcagaaaactgtttacatctggtggagatggtgcacagcaaacggcgtaatgcg
caaaaatttcaccttggaggcaccccacgaaaggttatctaccatagtgaaagcaaacta
ttgattgtgatgagaactgatctgtacgatacgtgtacgtctgatatatgctgtgtggac
ccgctcagtgggtcagtgttatcatcctacaagctcaaacctggagaaactgggaagtca
atggagcttgtacgtgtgggaaatgagcatgtccttgtggttgggacgagtttgtcttct
ggtcctgctatactacccagtggtgaagctgaaagtacaaaaggacgattaatcatcctc
tgcttagaacacactcaaaactccgatagtggctcaatgacaatttgctcaaaggctggt
tcgtcttcccaacgtacatcaccttttcgtgatgttgtgggatacacaacagaacaacta
tcaagcagtagtcactgcagcagtccagatgataatagctatgatggaatcaaatttgat
gaagctgaaacatggcagttaagattggcctctgcaaccacttggccggggatggtactt
gcaatctgtccataccttgatcattacttcctggcgtctgctggcaatgctttctatgta
tgtggttttccgaacgatagtcctgagagaatgaagaggtttgcagtgggaaggactcgt
ttcatgataacatctctgcgcacatacttcactagaattgtagttggggattgccgtgat
ggtgttcttttttattcttatcacgaggagtcgaagaaacttcaccaaatatattgtgat
ccagcgcagaggttagttgctgactgctttctaatggatgccaattctgttgctgtatct
gatcgcaaggggagtatagcaatcctgtcttgccaagatcattcagaatttgaatattca
agtccggagtccaacctgaatctaaactgtgcttattacatgggtgagattgcaatggct
atcaaaaagggttgcaacatctacaaacttccagctgatgatgtactgcgaagttatggt
cttagtaaaagtattgacacagctgatgacactatcatagcaggcacgctattgggaagt
atatttgtgtttgctcctatttcaagcgaggaatatgagctcttagaagctgtccaagca
aagctcgggatccatcccctgactgctcctgtacttggtaatgatcataatgagttccga
ggtcgagagaatccgtcccaagcgacaaagatattggatggtgacatgcttgctcagttc
ttggagcttacaaatagacagcaggagtcagttttattgacacctcagccatcaccaagc
acatcaaaagcaagttcaaaacaacgttcttccccgcctctcatgctacaccaagttgta
cagttgctcgagcgtgtccattacgctttgcactag
DBGET
integrated database retrieval system
