Arabidopsis lyrata (lyrate rockcress): 9320994
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Entry
9320994 CDS
T01578
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9320994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9320994
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
9320994
SWR1 complex
9320994
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
9320994
NCBI-ProteinID:
XP_020886349
LinkDB
All DBs
Position
Unknown
AA seq
2058 aa
AA seq
DB search
MASKGGKSKPDIVMASKGGKSKPDNDSRAKRHKTLEAPKEPRRPKTHWDHVLEEMAWLSK
DFESERKWKLAQAKKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKV
EKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPLLAI
ESKSDEERAEQIPPEINSSAGLESGSPELDEDYDLKSEDETEDDEDTIEEDEKHFTKRER
QEELEALQNEVDLPVEELLRRYTAGRVSRETSPVKDENVDNLASVSRETSPVKDENEDNL
ASVGQDHGEADKNNLTASEETEGNPNVRRSNDSYGHLAISETHSHDLEPGMTTASVKSRK
EDHTYDFNDELEDVDFVGATGEEKDDETTLAIEEELAKADNEDHVEEIALLQKENEMPIE
VLLARYKEDFGDKDISEDDSEYSCAQSEDSIVNSDENRQQADSDNENVDSTECKPDPEPC
SENVEGTFHEITEDNGKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSLREY
QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLN
WETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWK
YLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQ
EFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRL
SKRQRNLYEDFIASTETQATLNSGSFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGI
DVQLSSTICSLLLESPFSKVDLEALGFLFTHLDFSMTSWEGDEIKAISTPSELIKQRVNL
KDDMEAIPLSLKNRKNLQGTNIFEEIRKAVFEERVKETKDRAAAIAWWNSLRCQRKPTYS
TSLRTLLTIKGPLDDIHHLKANCSSYMYSSILADIVLSPIERFQQMIELVEAFTFVIPAA
RVPSPACWCSKSDSPVFLSPSYKEKVTDLLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGK
LQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQR
FNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIY
RLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFSGHKTLTTKDEKET
SKNCGAEIPLSNADVEAALKQAEDEADYMALKRVEQEEAVDNQEFTEEPVERPEDDELVN
EDDIKADEPADQGLVAAGLAKEEISLLHSDIRDERAVITTSSQEDDADVLDDVKQMAAAA
ADAGQAISSFENQLRPIDRYAIRFLELWDPIIVEAAMENEAGFEEKEWELDHIEKYKEEM
EAEIDDGEEPLVYEKWDADFATEAYRQQVEVLAQHQLMEDLENEAREREAAEVADMDLTQ
NVSAHVLKPKKKKKAKKAKYKSLKKGSLAAEAKHVKSVVKIEDSTDDDNEEFGYVSSSDS
DMVTPLSRMHMKGKKRDLIVDTEEEKTSQKKAKKHKKSILNSDIKYKQTSALLEELEPSK
PSDSVVVDNELKLTNRGKTIGKKFITSMPIKRVLMIKPEKLKKGNLWSRDCVPSPDSWLP
QEDAILCAMVHEYGPNWNLVSGTLYGMTAGGAYRGRYRHPAYCCERYRELIQRHILSASD
SAVNEKNVNTGSGKALLKVTEENIRTLLNVAAEQPDTEMLLQKHFSCLLSSIWRTSTRTG
NDQMLSLNSPIFNRQFMGSVNHTQDLARKPWQGMKVTSLSRKLLESALQDSGTSQPDDTV
SRSRLQENQPINKVGLDLTLEFPRGKDDSLTQFPPMINLSIDGSDSLNYVNEPTGEDVLK
GSRVAAENRYRNAANACIEDSFGWASNTFSANDLKSRTGTKTQSLGKHKLSGSDSAKSTK
SKHRKLLAEQLEVAWVRPNDPNLKFDFTPADREDEEQEVEENAVSEEIEMISCSQWYDPF
FTSGLDDCSLASDISEIE
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaaaggtggcaaatctaaacctgatatagtaatggcgtccaaaggtggcaaa
tctaaacctgataatgactccagagctaaacgtcacaagacgctcgaagctcctaaagaa
ccacgtcgcccgaaaactcactgggaccatgttttggaggagatggcttggctctcaaag
gactttgagtctgagaggaaatggaagctggcgcaggcgaagaaggttgctttgagggcc
agcaaaggaatgctagatcaggcatctagggaagaaaggaagctaaaggaagaagaacag
cggctacggaaagtagctctcaatatctctaaagacatgaaaaagttttggatgaaagta
gagaagctggtgctttacaagcatcagctggtacgcaatgagaagaagaagaaggctatg
gacaagcaacttgaatttctgttaggccaaactgagaggtactcaaccatgttggctgaa
aatttagtggagccttataaacagggccaaaatactccttcaaaacctctactagctatc
gaatcaaaaagtgatgaggagagggcagaacagatacctccagagataaattcttctgca
ggtcttgaatcaggaagtcctgaactcgatgaggactatgatctaaaatccgaggatgag
accgaagatgatgaagatactattgaggaggatgaaaaacacttcaccaaacgggaaaga
caggaagagttggaagctttgcaaaatgaagtggatctaccagttgaggagctgctcaga
cgttatactgctggaagagttagccgagaaaccagcccagtaaaagatgaaaatgtggac
aatctggcctcagttagccgagaaactagcccagtaaaagatgaaaatgaggacaatctg
gcctcagtaggtcaagatcatggagaggcagacaagaacaatcttacagcttctgaagaa
actgaagggaacccaaatgttcgtcgttctaatgatagctatggccatttggcaatatct
gagacccattctcatgacctcgaaccaggcatgacgactgcatctgtgaagtccagaaag
gaagatcatacctatgatttcaatgatgaactggaagatgttgactttgttggtgccact
ggtgaggagaaggatgatgagacaacattggctatcgaagaggaattggcgaaagctgat
aatgaagaccatgtcgaagagattgctctgctgcaaaaagagaatgaaatgcctattgaa
gtactacttgcaaggtataaggaggatttcggtgacaaggatatatctgaggatgactct
gaatattcatgtgctcaatctgaagactctatagtaaactctgacgaaaataggcagcaa
gctgattcagataatgaaaacgttgattcaacagaatgtaagccagatccagagccttgc
tcagaaaatgttgaaggcacattccatgaaataacagaagataatggtaaagatagtagt
gataaaattgctgatgcagcagcagcagcaagatctgcgcagccaactggatttacatac
tccacaacaaaagttcgaacgaaactgccgtttctactcaagcattctctgcgtgagtac
caacacattggtttggactggcttgtcacgatgtatgagaaaaggctgaacggtattctg
gctgatgaaatgggtcttggaaagaccattatgaccattgctcttctagcacacctcgca
tgtgataaggggatatggggtccccatctgattgtggttccaacaagtgtgatgcttaat
tgggagacggagtttcttaaatggtgtcctgcatttaaaattctcacctactttggtagt
gcaaaggagcggaaactcaagagacaaggatggatgaagcttaactcatttcatgtatgc
ataacgacctataggctagttattcaggacagtaaaatgttcaagcgcaagaagtggaaa
tacttgattcttgacgaagcccatttaattaagaattggaagtctcagagatggcagaca
ctattgaacttcaattctaaacgcagaattttgttgactggtacaccactgcagaatgat
cttatggaattgtggtcacttatgcattttctgatgccacatgtttttcagtcccaccag
gaattcaaagattggttctgtaacccgatagcagggatggttgagggacaagaaaaaatc
aacaaagaagttattgatcgcttacataatgtcctccgtcctttccttctacggcgccta
aaaagggatgtggagaagcaacttccttcgaaacatgagcatgttattttctgtagactg
tctaagaggcaacgcaacttgtatgaggacttcatagcaagcacagaaacacaggctacg
cttaacagtggaagcttttttgggatgataagtatcataatgcagttgcggaaagtttgt
aatcatcctgatctctttgagggtcgtcctattgtaagttcttttgatatggctggcatt
gatgtgcagttgagttcaacaatctgttcgctgcttttggaaagtccgttctccaaggtt
gatcttgaggctttgggattcttattcacccatcttgatttttcgatgacttcttgggaa
ggagatgagataaaagctatttcaacaccctcagaattaatcaaacagcgtgtgaacttg
aaggatgatatggaagcaatccctttgagtttgaaaaaccgcaaaaatctgcaagggaca
aatatttttgaagaaattcgtaaggctgtttttgaggaaagggttaaagaaactaaggat
cgggcagcagccattgcctggtggaattctttgagatgccagagaaagccgacttactct
acatctctaagaactcttttgaccattaagggtcctcttgatgatatacaccatcttaaa
gctaactgttcatcttacatgtattcctcaatcctcgctgacatagttctttcaccgatc
gagcgttttcagcaaatgattgagctagttgaagctttcacttttgtgattccagctgca
cgagtgccttcacctgcttgctggtgcagcaaaagtgactctcctgtttttcttagtcca
tcatacaaggagaaagttacagatttattgtcacctcttttatctccaattagacctgca
atcgttaggagacaagtatatttcccagataggcgactgatacagtttgattgtggtaag
ctgcaggagcttgcaatgttattgaggaaattaaaatttgggggtcacagagcgttgata
ttcacgcaaatgaccaagatgcttgacgtcttggaggctttcattaatttatatggttat
acctacatgcgtcttgacggctctactccgccagaagagaggcagacattaatgcagcgg
tttaatacaaatcccaagatctttcttttcattttgtcaacccgaagtgggggcgttggc
atcaaccttgtgggtgcggacacagttatattctatgacagtgactggaatcctgctatg
gatcaacaagctcaagatcgctgccacaggataggtcaaacacgtgaagtgcatatttac
cggttgataagtgagagcaccattgaggagaatatcttaaagaaagcaaaccagaagcgt
gtgcttgataacctagtaatacaaaacggagagtataacaccgaatttttcaagaagctc
gatccaatggaattgttctctgggcataagactctgactacaaaggatgaaaaggaaaca
agcaaaaattgcggggcggagatacctctgtcaaatgcagatgttgaggctgctttaaaa
caggcagaagatgaggcagactatatggctcttaaaagagtagaacaagaagaagctgtg
gacaatcaagagtttacagaagaacctgtagagagaccagaagacgatgagctagtaaat
gaagatgacataaaggctgatgagcctgctgatcaaggtttagttgcagccgggttggcc
aaagaagaaatttcattgttacatagtgatattagggatgagagagctgtaatcactact
tcaagccaagaagatgacgctgatgtgttagatgatgtcaagcaaatggctgcagcagcc
gctgatgctggacaagctatctcatcttttgagaatcagctacgtcctattgatagatat
gcgattagatttttagagctttgggaccctatcattgttgaggctgcaatggaaaatgaa
gcgggatttgaagagaaagaatgggaacttgaccacattgagaagtacaaggaggaaatg
gaagctgagattgatgatggggaagagcctcttgtttacgagaaatgggatgctgatttt
gcaaccgaggcatacaggcagcaagtggaagtcttagctcagcaccagttgatggaagat
ttggaaaatgaagctagagagagggaagctgcagaggtggctgatatggatttgacacag
aacgtaagtgctcatgtactgaagcctaagaagaagaaaaaggcgaagaaagccaaatat
aaatccctgaagaaaggatcactggctgccgaagcaaaacatgtgaagtcagttgtgaaa
attgaagattcgactgatgatgataatgaagaattcggctatgtgagtagcagtgactca
gatatggttacaccactttcgcggatgcatatgaaaggcaagaaaagagatttaattgtt
gacactgaagaagagaaaacctcgcagaagaaagcaaagaagcacaagaagtctattctg
aattcagatatcaaatataagcaaacaagtgctctacttgaggaactggaaccatcaaag
ccgtctgacagtgtggttgttgataatgaattgaaactgacgaacaggggtaaaactata
gggaaaaaattcatcacttccatgccaataaagcgtgttcttatgatcaagccagagaaa
ttgaagaaaggaaatctgtggtctagagattgtgttccctcgcctgattcttggttgcct
caggaagatgctatattgtgtgccatggttcatgaatatgggcctaattggaatttggtt
agcggaactctttatggaatgacagctggtggggcttacagaggaaggtatcgacatcct
gcatattgttgtgagagatatagagagcttatccaacgacatattttgtctgcttccgac
agtgcagtgaacgagaagaacgtcaacacaggttctgggaaggctctccttaaagtcact
gaggaaaatatacggacactcctaaatgttgcagctgagcagccagatacggagatgctc
ctacaaaaacatttttcttgcttgctgtcatcaatttggaggacgtcgacccgaactggg
aatgatcaaatgctctccttaaatagtcctattttcaacagacagtttatgggttccgtg
aatcacacccaagatttagctagaaagccttggcaggggatgaaggtcaccagcttaagt
agaaagttgttagaatctgctctccaggattccggcacgagtcagccagacgatactgtt
tcccgttctaggttgcaggagaatcaacctatcaataaagtgggattagacttaaccttg
gaattcccacgcggcaaagatgattccctgacacagtttccacccatgataaatctgtcc
attgatgggtcagattcattaaattatgtgaacgagcccacaggggaagatgttctaaaa
ggttctagggttgctgcagagaaccgttacaggaatgctgcaaatgcttgtattgaagat
tcatttggatgggcttcaaacacgttctcagccaatgatctgaagtcaagaacaggcacg
aaaacacagtccctggggaaacacaagctatctggctcagactcagccaagtcaacaaaa
agcaaacaccgcaaactcctagcagagcaattggaagtggcatgggttaggccaaatgac
ccgaatctcaagtttgatttcacacctgctgatagggaggacgaggagcaggaggtggag
gagaacgcggtttcagaagagatagagatgataagttgttcacaatggtatgatccattc
tttacctcaggccttgatgattgctcactagcttcggatatctcagaaatagagtag
DBGET
integrated database retrieval system
