Arabidopsis lyrata (lyrate rockcress): 9321172
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Entry
9321172 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X3
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9321172
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9321172
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
9321172
NCBI-ProteinID:
XP_002885106
UniProt:
D7L4X0
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MKKKTWFLNFSLFILQIFTFSNALDVTQLGAIGDGVTDDSQAFLKAWEAVCSGTGDGQLV
VPAGVTFMLQPLKFQGSCKSAPIFVQILGNLVASSKGNWKGDKDQWILFTDIEGLVIEGG
GEINGQGSSWWEHKGSRPTALKFKSCNNLRLSGLTHVDSPMAHIHINDCNYVTISSLRIN
APESSPNTDGIDVGSSSNVVIQDCVIGTGDDCIAINSGTSNIRISGIDCGPGHGISIGSL
GKDGETATVENVCVQNCNFRGTTNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQL
YNGGDSDKAKDHKSSAVEVSKVVYSNFIGTSKSEYGVDFRCSETVPCTEIFLRDVKIETA
SSGSGQVAQGQCLNVRGVSTLAVPGLECLALSPDMLSSTQLPEQTCMLAQSVQPRTTQPM
QDPIWDFESRGKRLRVYNAVLVSFVSLVTYILGD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaagacctggttcttgaatttctcactgttcattctccaaatcttcacattt
tcaaatgcattggatgttactcaattaggagcgattggtgatggagttacagacgattcg
caggcgttcttgaaagcttgggaagctgtttgtagcggaacaggagatgggcagcttgtc
gttccggcaggggtgacatttatgttacagcccctgaagtttcaaggttcttgcaaatcg
gccccaatttttgttcagatattaggcaatctggttgcatcgagtaaaggaaattggaaa
ggagacaaagatcaatggattctttttacagacattgaaggacttgtgattgaaggtggc
ggtgaaattaacggtcagggttcgagctggtgggaacacaaaggctccagacctaccgcg
ttgaagttcaagagctgcaacaaccttagattgagtgggttaacgcatgtagatagtcca
atggctcacattcacataaacgattgcaactatgtgaccatctcaagtctacggataaat
gcgccggaatcaagtcctaacactgatggaatcgacgtaggctcttcatccaacgttgtc
atccaggattgcgtcatcggtaccggtgatgattgcattgcgattaattcggggacgtct
aatatccggatttctggtatagattgcggaccaggccatggaataagcataggaagcttg
ggaaaagatggggagacagctacagtggagaatgtatgtgtccaaaactgtaactttaga
ggaactactaatggtgctcggatcaaaacctggcagggcggatcgggttacgcgagaatg
attactttcaatggaattactctagataatgttgaaaatccaatcataatcgatcagctc
tataacggtggagattctgataaagccaaagatcataagtcgtcggcagtggaagtgagc
aaagtggtgtatagcaatttcattgggacgtcgaagtcagagtacggcgttgacttccga
tgcagcgagacagtaccatgcacagagattttcttaagagacgtgaaaatagaaacggca
tcatcaggatcaggacaagtcgcacaaggacagtgtttaaacgtgagaggtgtgtcaaca
cttgctgtaccaggtctagaatgtttggccctttccccagatatgttgtcatcgacgcaa
ttgccggaacaaacttgcatgttggcacaatcagtgcaaccaagaacaacacaaccgatg
caagatccaatatgggattttgaaagcagagggaaacgacttagagtttacaatgctgta
ttagtttcatttgtctctttggttacatatattttaggtgattaa
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