Arabidopsis lyrata (lyrate rockcress): 9321345
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Entry
9321345 CDS
T01578
Name
(RefSeq) autophagy-related protein 13b isoform X1
KO
K08331
autophagy-related protein 13
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
9321345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9321345
03029 Mitochondrial biogenesis [BR:
aly03029
]
9321345
Membrane trafficking [BR:
aly04131
]
Autophagy
Autophagosome formation proteins
ULK complex
9321345
Atg1 complex
9321345
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
9321345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
9321345
NCBI-ProteinID:
XP_002885279
UniProt:
D7L948
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MSSSHNRSNKNSEGAKAEQIIFEFFAKSLHIILESRTPFMSSRNFSGDQMICSPSSSSSS
SSSVRPRDKWFNLALRECPAALESFDIGRRSSLEPLVVDVVLVVRPLVGDQMNLSGKREL
IRNFSGKDYQSGWNSDQDELGCEAKNEQIIERWVVQYDNRKIRESVTTSSRRSSSNKLQV
MYKKATLLLRSLFVMVRLLPAYKIFRELNSSGQIFKFKLVPRVPSIVEPFTRREEAEMQK
FSFTPVETICGRLCLSVLYRSLSDVSCEHSTPMSPTFITDYVGSPLADPLKRFPSLPLSY
GSPPLLPFQRRHSWSFDRYKASPPSVSCSPSPTRSDSHALVSHPCSRHLPPHPSDIPTGR
RKECYAEGYPPSQDFSPPPSPSAPKHAVPRGITRTESAPVRIPAPTFQSKENVVAPSGHL
KLSRHPSLKPVRNLGPGESGGAIDKLFLYGRDDFRRNSGVRPSSNSSPRISFSRSSSRSF
QDDFDDPDFPCPFDVEYDDIADRNSRPGSFDHRGDIHEPLDSSGSYPKKSQDAEVGALVR
MLKKAPPLRQDVSESSIPEICWNNNNSNKPAGAHEIAVASITASGITLASKTTADALEEL
RSYKEMKNHLLLSQSTSNPSSVTTSPFEV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttcacacaacaggagtaacaaaaattcagaaggtgctaaagctgaacaaatc
atatttgagttctttgctaaaagccttcacatcattctcgagtcaaggactccttttatg
tcttcaaggaattttagtggtgaccagatgatttgttctccttcctcatcttcttcctct
tcctccagtgtcaggcctcgcgacaaatggttcaatctagctcttagggaatgccctgca
gcgttagagagttttgatatcgggaggagaagcagtcttgagcctttggttgttgatgtg
gttcttgtggtgaggccacttgttggtgatcagatgaacttgtctggtaaaagggagctt
atcaggaatttttccgggaaagattatcagtcgggttggaattctgatcaagatgaattg
ggatgtgaagctaagaacgagcagattattgagagatgggtggtgcagtatgataatagg
aagatcagggaatctgttactaccagtagcaggaggtcaagcagtaataagttgcaagtc
atgtataagaaagctactctgctgctaagatcattgtttgtgatggttaggcttttacct
gcttataagattttccgggaacttaattcctcggggcagatcttcaagttcaagcttgtt
cccagggttccctctattgttgagccattcactcgtagagaagaggcagaaatgcagaag
ttttctttcacaccggttgaaactatctgtggtagactttgcttatcggttttatatcgt
tctctttccgatgtcagttgcgaacactcaactcctatgtctccaacatttataaccgat
tatgttggaagtcccttggctgatcctttaaagaggttcccttcccttcctctttcatat
ggttctcctccattgctgccatttcaaaggcggcatagctggagtttcgatcgttacaaa
gcatctccaccttctgtttcttgctcaccatcgcctacacgctcggattcacatgcattg
gtttcacatccttgctcccgtcaccttcctcctcacccttctgatatacccactggtcgt
aggaaggaatgctatgctgaaggatatcctccttctcaagatttctcccctcctccttct
ccttcagccccaaaacacgccgtcccaagaggcatcacgcgtactgaaagtgctccagtc
agaatcccagctccaactttccagtccaaagaaaacgttgtggcaccttctggtcatctg
aaattgtcgagacacccttcgttgaagcctgtgagaaacttgggtcctggtgaatctgga
ggagcaatagataagctgtttctttatgggagagatgactttagaagaaattctggggtg
aggccgtcttccaacagctcaccgcggatatcattttcccggagttccagtagatctttc
caagacgattttgatgatcctgatttcccttgcccatttgatgttgagtatgatgatatc
gcagatcgtaatagcagaccagggtcgttcgaccacagaggagacatacatgaaccactc
gattcaagtgggtcatacccgaagaagtcccaagatgctgaagttggtgcccttgtgaga
atgctgaagaaagctcctcctctcagacaagatgtctctgaatcttcgatacctgaaatt
tgctggaacaacaacaacagcaacaaacccgcaggggctcacgagatagcagtagcgtct
atcacagcctcggggattactctggcctcaaagacaacagctgatgcattggaagagttg
aggtcttacaaagaaatgaagaatcatttgttgcttagtcaatccacatcaaacccttcc
tcggttactacttcaccttttgaagtttga
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