Arabidopsis lyrata (lyrate rockcress): 9321358
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Entry
9321358 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1b
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9321358
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
aly01001
]
9321358
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9321358
03036 Chromosome and associated proteins [BR:
aly03036
]
9321358
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
9321358
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
9321358
Protein kinases [BR:
aly01001
]
Serine/threonine kinases: Other
TAF1 family
9321358
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
9321358
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
9321358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3591
Bromodomain
ubiquitin
Rad60-SLD
zf-CCHC_6
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
9321358
NCBI-ProteinID:
XP_020887924
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MSEFNGNETSSDYESNDEESDGPELQVVTEEDHLLPKREYFSAAFSLSSLNSRASVFDDE
DYDEDEGQEEKHVPVEKSFDPGEREPVVLLEENHVGYEKEAGILGNKDQMDTGDVQKEEL
DDLSECNLDEKSVTPLPTLYLDDDGMVILQFSEIFAIQEPRQKRQKREIRCITYREKYIS
MDISELVEDDEEVLLKSHGRINTHEKEANQIQLAVPLPIRECSQLVKSGTVRDTSSESRE
FTTLGRDSCIMGELVKQDLKDDNSSLCQSQLTMEVFPLDQQEWEHLILWENSPEFSDNXG
KGFKSGLESEGMLVQVRASNSVTEQESLNVMNSGGQAQADNNMLVPFCVNPLESFGSRGS
QSTNESTNKSRHHPQLLRLESERDEDHHSENDDAGWENLKQLNSDALGRLSGFALQDRDM
CDESWLDSIIWESDKDLSRSKLIFDLQDEQMIFEVPNNKERKYLQLHAGSRIVSRSSKSK
DGSFQEGCGSNSGWQFNISNDKFYRKGKSSQKLQGNAKKSGVHSLRVFHSALAIKLQTMK
IKLSNKEKANFHRPKALWYPHDNELAIKQQEKLTTQRSMKIVVKSLGGKGSLLHVGREES
VSSLKAKASRKLDYKETEAMRMFYMGKELEDEKSLAEQNVQPNSLVHLLRTKVHLWPWAQ
KLPDENRSLRPPGAFKKKSDLSNQDGHVFLMEYCEERPLILSNAGMGANLCTYYQKSSPE
DQHGNLLRNQSDTLGSVIILEHGDKSPFLGEIHGGCSQSSVETNMYKAPVFPHRLQSTDY
LLVRSAKGKLSLRRIDKIVAVGQQEPRMEIMSPASKNLHTYLVNRLVAYVYQEFKLRDRI
AADELSFLFSNVSDATVRKNMKVCADLERDENGKPCWSKKRNFDKILLGLNTLVAPEDVC
SYESMLAGLFRLKQLGITWFTLPASISTALARLPDEAIAAASHVERELQITPWNLSSSFV
TCTTQGRENIERLEITGVGDPSERGLGFSYIQVARKASAASEHMKKKVAACRGVPTVTGT
DADPRRLSMEAAREVLLKFNVPDEIIAKQTRRHRTAMIRKLSSEQAASGGKVDPTRIGMF
ARGQRMSFLQLQQQARERCQEIWDRQRLSLSACDGDGNESENEANSDLDSFVGDLENLLD
VEGAGEGEESYKSMNEKLDGVKGLKMRRWPSQVEKDEENEDEAAEYAELCRLLMQDENHK
KKKKMKVVGEGMGSFPPPRPNVEPVIDKKSIATQPDASFLIVNESTVKDTTNADKATFKA
HKDKQVTEIGTPIGQLKKLKILKENQKVFKEKKTARANFVCGACGQHGHMKTNKHCPKYR
GNTESHSESIYMKKSTGKLSSSDLSGEVWLKPIENQKPAPKSATKISVNEATKVGDSTSK
TPGSSDLAAVSDIDSGTKLTSRKLKISSKAKPRASMVESDSPSHSLMPAFSREREESESH
NPSVSGQLLPSTETNQAASSRNTISVPHPSLSTDKDQAESCRPHRIIWPPTEKEHPQKKL
VIKCLKEITDHDSGSLEETPQFESRTTKRMAELADFQRQQRLRLSDNCLNWGAKEDRIWR
KEQDISTERHREGKVRRDYDDITVSKNRSEIAEIRRYKEVIWSERGEEERQKAKQKKNLQ
REIIEDYPPRRKERKLSERGQNINSLCVSDFERNGTEYARQPKRRKKGQVGLANILESIV
DTLRAKEVSVSYLFLKPVSKKEAPNYLDIVKRPMDLSTIRDKVRRMEYSDREQFRHDVWQ
IKFNAHLYNDGRNPVIPPLADELLVKCDRLLLEYRDELTEAEKGIVDSSDSLR
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattcaacggcaacgagacttcctcagattatgagagcaatgatgaagagtct
gatgggcctgaacttcaagtagttactgaggaagatcatctactaccgaaaagggagtac
ttttcagctgcattttctttgagtagcttaaattccagagcttctgtgtttgacgacgaa
gattatgatgaggatgaaggacaagaggagaaacacgtgccagttgaaaaatcttttgat
ccaggagagagggaaccagttgtcttgttggaggaaaatcacgtggggtatgaaaaggag
gctggcatcttgggaaataaggatcagatggacacaggagatgtccagaaggaggagctg
gatgacttatcagaatgtaatttggatgagaaaagcgtcaccccgctgcctacgttgtat
ctggatgatgatggtatggtcatcttacaattctctgagatatttgctattcaagagcca
cggcagaaacggcagaagagagaaattagatgtatcacttatagagaaaaatacatatct
atggatatttctgagcttgttgaagacgatgaggaggtactcctgaagagccatggtagg
attaacactcatgagaaagaagctaatcaaattcagctggctgttcccttaccaatcaga
gagtgttcacagctggtaaaatctggcacagtaagggatacttcatcagaatcgagagaa
tttaccacgctaggaagggattcatgtatcatgggtgaactggtgaagcaggacttaaaa
gacgataattcatctctttgtcagtctcaattaacaatggaagttttccctcttgaccag
caagaatgggaacatctaatactctgggaaaattctcctgaatttagtgataatnctggt
aagggcttcaaatctggacttgagtcggaaggtatgctggttcaggtgagggcttcaaat
tcagtgactgaacaagaaagcttaaatgtgatgaactctggagggcaagctcaagctgac
aataatatgctcgtgcctttttgtgtaaatcccttggagtcttttggctcaagaggttcc
cagtctacaaatgagtccactaacaaaagtagacatcatccacaactcctaagattagaa
tccgagcgggatgaagatcatcatagtgaaaatgacgatgctggatgggagaatttaaag
cagcttaatagtgacgctcttgggcgcttgagtggatttgcattgcaagatagggatatg
tgtgatgagtcatggttagatagcataatatgggagtcagataaagatttgagcaggtct
aaactaatatttgatcttcaagatgagcaaatgatctttgaagttccgaataataaggaa
agaaaatatcttcaacttcatgcgggatctaggattgtatctcgatcttcaaaatccaag
gatggatcctttcaagaaggctgtggatcaaattctgggtggcaattcaatatttctaat
gacaaattctataggaaggggaaaagctctcagaaactgcaaggaaatgctaagaaatct
ggcgtacacagtttgagagtttttcattcggcactagcgattaaattgcagacgatgaag
attaaattaagcaataaagagaaagcaaatttccaccggcccaaagctctgtggtatcca
catgacaatgagctagccatcaagcagcaagaaaagttaaccacccaaagatccatgaaa
attgtagttaagagtctggggggtaaaggatcactgctacacgtcggcagagaggaatct
gtctcctctttaaaagccaaggcttctagaaagctagattataaggaaacagaagcaatg
agaatgttttatatggggaaggaacttgaggatgaaaagtctcttgctgaacaaaatgtt
caacccaattctcttgtccatcttttacgtaccaaggtacatttgtggccatgggcacaa
aagcttccggacgaaaatagatctttaagacctcctggggcattcaagaagaaatctgac
ctatctaatcaagatggccatgttttcttgatggaatattgcgaagagaggccgttgata
ctcagcaatgcaggaatgggtgcaaatttgtgcacgtattatcagaagtcatccccagag
gatcaacatgggaacttgctgcgcaatcaaagtgataccttagggagtgtgattattcta
gaacatggggacaaatcccctttccttggggaaatacacggtggttgcagtcagtcatct
gttgaaacaaacatgtacaaagcacctgtttttcctcataggttgcaatcaacagattat
ttgttggtccggtctgctaaaggaaagctctctctaaggcgtattgacaagatagttgct
gttggacaacaggaacctcgaatggaaataatgtctcctgcatcaaagaatctacatact
tatttggtgaacagattggtggcctatgtgtatcaagagtttaagcttcgagaccgtatt
gctgccgatgagctgtctttcttattttctaacgtctcagatgcaactgtcaggaaaaac
atgaaagtttgtgccgatttagagagagatgaaaatggcaagccttgctggtccaagaaa
cgtaattttgacaagattctacttgggttgaacactctggtggcaccagaggatgtgtgt
tcctatgagagtatgctagctgggctgttccggctcaaacaattagggatcacctggttt
acattgcctgccagcatatcaaccgcattggctcggctcccagatgaagcgattgccgct
gcatcacatgttgagagggagttgcagattactccatggaatctgagcagtagttttgtt
acttgtacaactcagggcagagaaaatatagaacgtttggaaattactggagttggtgat
ccctctgaacggggtctaggattcagctacatccaagttgcacgaaaagcatcagctgca
tccgaacatatgaagaaaaaggtagcagcctgtcgcggagtcccaactgtcactggtaca
gatgctgatcctcgcagattaagcatggaagcagctcgagaggttcttctcaagttcaat
gttcctgatgagataattgctaagcaaactcgacggcatcgtacagctatgatacgcaag
ctatcaagtgagcaggctgcatctggtggtaaggttgaccccacaagaataggtatgttt
gcacgtggccagagaatgtctttcctacagttgcaacagcaggccagagaaaggtgtcag
gagatttgggataggcaacgtctgtccctttcagcttgtgatggtgatgggaacgaaagt
gaaaatgaggcaaacagtgacttggactcctttgttggagatctggaaaatctacttgat
gttgagggtgctggggagggggaagaatcttataagtctatgaatgaaaagttggatgga
gtgaagggcctcaagatgagacggtggccatctcaagttgagaaagacgaagaaaatgaa
gatgaagctgctgaatatgccgagttatgccgattgctgatgcaagatgagaatcacaag
aagaaaaagaagatgaaagttgtgggagagggaatgggatcctttcctcctccacggccc
aatgttgaacctgtcattgacaagaaatctattgccacccaacctgatgcatctttctta
atcgtgaatgagagcaccgtcaaagacaccacaaacgctgataaagctacttttaaggcc
cacaaagataaacaggtaacagagatcggcactcctataggccagctgaagaagctcaaa
atactgaaggaaaaccaaaaggtattcaaggaaaaaaaaacagcaagagcgaacttcgtc
tgtggagcctgtggtcagcatggacacatgaaaaccaataaacactgcccaaaatacaga
ggaaatacagaatcacattcggaaagtatatatatgaagaagtctactggaaaactgagt
tcttcagatctatcaggcgaggtctggctgaaacctatcgagaaccagaagcctgcgcca
aaaagtgctacaaaaatttctgtaaatgaagctacgaaagtaggtgattcaacttccaaa
actccaggaagttctgacctagcagctgtgtctgatatagactctgggactaagttgacg
tctaggaaactcaagatttcaagtaaggcaaaacctagagcatcaatggttgaatctgac
agtccttcccattcattgatgcctgcatttagcagagagagagaggagagcgagtctcac
aatccttctgtttctggacaactcttacctagtacagagacaaatcaggctgcctcaagt
aggaacactatttcagttccgcatccatcgttaagcacggataaagatcaagctgaatct
tgtaggcctcatcgcattatatggccgccaacagaaaaagaacatccgcagaagaaactt
gttattaaatgtttaaaagagataactgatcatgacagcggtagtcttgaagagactcca
cagtttgagtccaggacaacaaaaagaatggcagaactggcagattttcagaggcagcag
agactcagattgtcagataactgtctaaactggggagcaaaagaggatagaatatggcgg
aaagaacaagatataagtacggaaaggcacagggagggaaaggtgagaagagattatgat
gatattactgtatcaaaaaatcgcagtgagatagctgagatcagaagatacaaagaggtt
atatggagtgagaggggggaagaggaacgacaaaaagccaagcagaaaaagaacctgcaa
cgcgaaataatagaagattatcctcctcgaagaaaagaaagaaaattgtcagaaagaggt
cagaacatcaacagcctgtgtgtatctgactttgaaaggaacgggacagagtatgcacgt
caaccaaaacgacgaaaaaaaggacaggttggcctagcaaacatcttggaaagcatagtg
gacacactgagagccaaagaggtaagcgtgtcatacctcttcttgaaaccagtttcgaaa
aaggaggctcccaactatcttgacattgtgaaacgcccaatggatctctcgacaatccgg
gataaggtacggaggatggagtacagtgacagagagcaatttagacacgatgtctggcag
atcaagtttaatgctcatctttacaatgacgggcgtaacccggtaataccgcctttagca
gatgagttgctggtaaaatgtgatcgcttgttgctagaatatagagatgagttaacagaa
gcagagaaaggtatagtagattccagtgactcattgagatag
DBGET
integrated database retrieval system
