Arabidopsis lyrata (lyrate rockcress): 9322101
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Entry
9322101 CDS
T01578
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9322101
03083 Polycomb repressive complex
9322101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9322101
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
9322101
Histone modification proteins
HAT complexes
HATB complex
9322101
HDAC complexes
Sin3A-HDAC complex
9322101
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
9322101
PRC2.2
9322101
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
9322101
Heterochromatin formation proteins
Other heterochromatin formation proteins
9322101
Chromatin remodeling factors
NuRD complex
9322101
NuRF complex
9322101
NuRF complex (fruit fly)
9322101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR19_1st
Ice_binding
Motif
Other DBs
NCBI-GeneID:
9322101
NCBI-ProteinID:
XP_002886035
UniProt:
D7L6Z5
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MESDEAAAVSPQATTPSGGTGASGPKKRGRKPKSKDYSQTPSSQQQSGGKMKESGKKTQQ
TPSVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGS
VPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIV
ATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGK
DKSVVLWSIQDHITTVGTDSKSSGSIIKQTGEGSDKNESPTVGPRGVYHGHEDTVEDVAF
SPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADN
TVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVS
KKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSD
LIYRPEEEVVAELEKFKSHVLTCASKP
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgacgaagcagcagcagtgtctcctcaagcaacgacaccgagcggaggaacc
ggagcttctgggccgaagaagagaggtcggaaacctaaaagcaaggactattctcagacg
ccgtcgtcgcagcaacagagcggtggcaaaatgaaagaaagtgggaagaaaacgcagcag
acgccgagtgttgacgagaagtactctcagtggaaaggtctcgtccccattctctacgac
tggctcgctaaccataacctcgtctggccttcactctcttgcagatggggtccgcagctt
gagcaagcaacctacaagaatcgccagcgtctctatctctcagagcaaactgatggaagt
gtgcccaatactttggtcatagcaaattgtgaagttgttaagccaagggtcgctgcagca
gagcacatttctcagttcaatgaagaagcacgttctccatttgtgaagaagtacaagacc
atcattcaccctggagaggttaacagaatcagggaactcccacagaatagtaagattgtt
gctactcacaccgacagtcctgatgttctcatttgggatgttgaaacccaaccaaaccgt
catgctgtgcttggagctgcaaattcccgtccagatttgatactaactgggcaccaagat
aatgctgaatttgctcttgcaatgtgcccaaccgaaccctttgtgctctctggaggcaag
gataagtcagttgttttgtggagtatccaagatcacatcacaacggttgggacagattcc
aaatcttctggatctatcatcaaacagactggtgaaggtagtgataagaatgagagtcct
actgttggcccacgaggtgtatatcatggccatgaagatacagttgaagatgtggcattc
agcccgacgagtgcacaagaattctgcagtgttggtgatgattcttgccttatactatgg
gatgcaagaactggcacaaaccctgtcacgaaggttgaaaaggcgcatgatgctgatctt
cattgtgtcgattggaatcctcatgacgacaatctgatcctgacagggtcagcagacaac
actgtccggttgtttgatcgtaggaagcttaccgctaatggagtcgggtcacctatttac
aaatttgagggccacaaagctgctgttctttgtgttcagtggtctcctgataagtcatcc
gtctttgggagctctgcagaagatggtctcttgaacatctgggattatgacagggtcagt
aagaagtctgatcgtgcagctaaaagccccgctgggctcttcttccagcatgctggtcac
agggacaaagttgttgatttccactggaatgcttcagacccttggactattgtcagtgtt
tctgatgactgtgagactactggtgggggtggaacattgcagatatggcggatgagtgac
ttgatttacagaccagaagaagaagtcgtggcagaattggagaagttcaagtcgcatgtt
ttgacttgtgcctccaagccttaa
DBGET
integrated database retrieval system
