Arabidopsis lyrata (lyrate rockcress): 9322305
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Entry
9322305 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein, cytoplasmic and nuclear
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9322305
09123 Folding, sorting and degradation
03018 RNA degradation
9322305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9322305
03041 Spliceosome [BR:
aly03041
]
9322305
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9322305
mRNA cycle factors
Stress granule specific factors
9322305
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
9322305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
9322305
NCBI-ProteinID:
XP_020887839
LinkDB
All DBs
Position
Unknown
AA seq
518 aa
AA seq
DB search
MASSSHKSAAEVNLLGKRKVEDGLETKSMLKRRKEEETTKEQIEASVELSETKSDEADFY
EEATAAETETVEGVDETPEFSSFSYYLTNTLGSYLQGLDRGAFVEFASANQAKKALEKKQ
GQYLHNRKIFPAVAIEGSRCFPPKYCIDHKVWYEEDYLEQQDCRLPIGKDPNSVKESALL
FVANLSPQTTKLSHITLFFKDVGDVVSVRLIVNQEGKHVGYGFVEFATAHQAKWALENKN
GEYLHDHKIFLMQGLDGTPDSAEAVAIRNKTLFVTNLSPITTKISHIINFFKDVGQVVHV
RLIVDQRCRMVGFGFVEFASANEAEKALEKKKGEYLHNREIALAFAKTDADTSKDADTSK
TKYCLDHMVWYEDYLEQREIEDAAVEGLDFVEDVALRKKTVFVAKRNMKKSGLCNIPNII
KLFKVVGEVVRAGVIVDHWGEHVGCCFVEFASADEAKKAVPVRNGYNFFVNVAEIDRPYP
FRLNYKLAEKLWYEDNLRREGFGLPIKPKLREAEPAID
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggccagttctagccacaaatcggccgccgaagttaatttacttggtaagcgaaaggtg
gaagatggtttggagaccaaatcgatgctgaagagacgtaaggaggaggagacaacgaaa
gagcagattgaagcaagtgtcgagttgtcggagacaaagtctgatgaggctgatttttat
gaagaagctactgccgccgagacagagacagtggaaggagttgatgaaactcccgaattc
tcttctttttcttattatctcacaaacacacttggctcatacctccagggcttggaccga
ggagcatttgttgagtttgcttctgctaaccaagcaaagaaggcattggaaaagaagcag
ggtcaatatttgcacaatcgcaagatttttcctgctgtggctattgagggatcccgatgc
tttccacccaagtactgcatagatcacaaggtttggtacgaagaagactaccttgaacaa
caagattgccgccttccgataggaaaagatccgaattctgtcaaggaatctgccctactc
tttgttgccaatctctctccccaaacaactaaactttcacatatcacccttttcttcaaa
gatgttggagatgttgttagtgttcgacttattgtaaaccaggagggtaagcatgtgggc
tatggctttgttgagtttgctactgctcaccaagcaaagtgggcgctggaaaataagaat
ggtgaatacttgcacgatcataagattttcttgatgcaaggacttgatggaactccagat
tctgctgaggcagttgccataagaaataagacactctttgttaccaatctctctcccata
acaacaaaaatatcacatatcatcaatttcttcaaagatgttggacaagttgttcatgtt
cgacttattgtagaccaaagatgcaggatggtgggttttggctttgttgagtttgcttct
gctaacgaagcagagaaggcgctggaaaagaagaagggtgaatatttgcacaatcgcgag
attgctcttgcttttgctaagacagacgcagacacttcaaaagacgcagacacttcaaaa
accaagtattgcttagatcacatggtttggtacgaagactaccttgaacaacgagaaata
gaagatgcagcagtagaaggactcgattttgttgaggatgttgccttaaggaaaaagacg
gtctttgtggccaaacgcaatatgaaaaagagtggtctttgtaacataccaaatatcatc
aagttattcaaagttgttggagaagttgttcgtgctggagttattgtagaccactggggt
gagcatgtgggctgttgctttgttgagtttgcttctgctgatgaagcaaagaaggcggtg
ccagtgaggaatggttataatttttttgttaacgtggctgagatagatcgtccataccct
ttccgactcaattacaagcttgcagagaagctttggtacgaagacaaccttcgacgagaa
ggctttggtttgccgatcaaaccgaagctgagggaagctgagccggcaatcgactga
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