Arabidopsis lyrata (lyrate rockcress): 9322331
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Entry
9322331 CDS
T01578
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
9322331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9322331
03400 DNA repair and recombination proteins [BR:
aly03400
]
9322331
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
9322331
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
9322331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
HDA2-3
WHD_SOWAH
ResIII
AAA_34
Motif
Other DBs
NCBI-GeneID:
9322331
NCBI-ProteinID:
XP_002886265
UniProt:
D7L2U5
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MEDQFLLSSLGVTSANPEDLEQSILDEATKKLDNDEGGSVEEKLEGSNLLSSSLNELLNK
LRAVKFEIDAVASTVDHVDEIAAENGSKNKDDESEVHGLHSGSALQHALATDRLRSLKKR
KIQLEKELTGLHGQSASSSADHDNLLRDLVKEKPSLKRKLKETQKPSRREGKKVKVVSFR
EDTDFDAVFDAASAGFVETERDELVRKGILTPFHKLDGFERRLQQPGPSNSRNLPEGDDE
NDKSEDSNSIDRAVQSMSLAAKARPTTKLLDAEDLPKLEPPTAPFRRLRKLYKTPDSPDN
EVKKSKAGKKSKKKRPLPEKIWRKRISREDSSLQESGDERRILTTSSCEEEELADFDDAD
DNETSSVQLEGGLNIPECIFRKLFEYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS
FLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKANE
SDYDSECSVDSDHEQKSKNTKKWDSLINRVLNSESGLLITTYEQLRLQGEKLLNIEWGYA
VLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVF
EAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLF
CSLTVEQRSTYRAFLASSEVEQILDGNRNSLYGIDVMRKICNHPDLLEREHSHQNPDYGN
PERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQR
MALIDEFNNSDDVFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQK
KDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFILKDDGDSN
ASTETSNIFSQLAEEINIVGAQSDKKPESATQLALHNTAEGSSEQTDVETTDKTGEAMDE
ETNILKSLFDAHGIHSAVNHDTIMNANDEEEKMRLEHQASQVARRAAEALRESRMLRSRE
SISVPTWTGRSGCAGAPSSVRRRFGSTVNSRLTQSGDKPSVIKNGISAGLSSGKAPSSAE
LLNRIRGSREQAIGVGLEQLPSSSGSSSRVGSLQPEVLIRKICSFVQQKGGSADTTSIVN
HFRDIVSFNDKPLFKNLLREIATLKKDQNRSFWVLKTEYKD
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcagtttttgttgagtagcttaggtgtcacatcggccaatcctgaagatcta
gaacagtccatactcgatgaggcgacgaagaaactagataacgatgagggtgggagtgtg
gaggagaagcttgaaggaagcaatctgctttcatccagcctgaacgagcttttgaataaa
ttgagggctgtgaagtttgaaatagatgctgttgcatcaacggttgatcatgtggacgag
attgcagcagaaaacggctcaaagaataaagatgatgaatcagaagttcatgggttacat
agtggttctgcacttcagcatgcccttgccacagaccgtttaagaagtcttaagaagaga
aaaattcaacttgaaaaggaacttactggtctacatggtcagagtgcgtctagtagtgct
gatcacgataatctactgcgagatctggtgaaggagaagcctagtcttaagagaaaattg
aaagagactcagaaaccaagtagaagagaagggaagaaggtgaaagtagtttcatttcgt
gaagacacagattttgatgctgttttcgatgctgcttcagcaggttttgttgaaacggaa
agagatgaattggtgagaaaaggaattttaactccgtttcacaagctcgatggttttgaa
cgccgacttcaacaacctggaccgtcaaactcgcgcaacctacccgaaggagacgacgaa
aatgacaaaagtgaggactccaacagtattgatagagctgtccaatcaatgtcgttggct
gcaaaggctcgccctacaaccaagctacttgatgcagaagacttgccaaagcttgaaccg
cccactgctccttttagaaggctaagaaagctttacaagacgcctgattctccggataat
gaagtaaagaaaagtaaagctgggaagaagagcaaaaagaagcggcctttgcctgaaaag
atatggagaaagcgaatctctcgtgaagactctagtcttcaagaaagtggagatgaaagg
agaatcttgaccacttccagttgtgaggaagaagagctagctgattttgatgatgcagat
gacaacgaaacatcttctgtacagcttgaaggtggattaaacattcctgaatgcatattt
cgtaaactttttgagtaccaaagagttggggtgcaatggctttgggaacttcattgccaa
agggctggtggcattatcggggacgagatgggtcttggtaaaactatacaggtcttatct
tttctcggatccttgcatttcagtaagatgtacaaaccgagtattatcatatgtcctgtt
acactcttgcgtcaatggagaagagaagcacagaaatggtacccagattttcacgtggaa
atactccatgactcagcacaagattctgggcatggcaaaggacaaggcaaggccaatgaa
agcgattatgacagtgagtgttcagttgatagtgatcatgagcaaaagtctaagaacacc
aagaaatgggattctttgataaaccgggttctaaattctgagtcggggctcctcatcacc
acatatgagcaattgaggctgcagggtgagaagctactcaatattgagtggggttatgcg
gtactggacgaaggccatcggatccggaacccaaattctgatattactttggtgtgcaaa
cagttacagaccgtccatcgaattattatgactggggcaccaatccagaataaactaaca
gaactctggtccttgttcgattttgttttcccgggaaaactgggggtcctgcctgtgttt
gaggcagagttttctgttcccataactgtgggtggctatgccaatgcttctcctttacaa
gtgtcgactgcctatcggtgtgctgttgttcttcgtgatttgatcatgccgtaccttctc
cgccgtatgaaggctgatgtgaacgcacatcttacaaaaaagactgaacacgttctcttt
tgcagcctcactgtagagcagcgatctacctacagggcattccttgcgagctctgaagta
gaacagattttggatggcaacaggaattcgctttatgggattgatgtgatgcgtaagata
tgcaaccaccctgatctacttgagagagaacattctcaccagaacccagattatgggaac
ccggaacgcagtgggaagatgaaggttgttgcagaagtgctcaaggtctggaagcagcaa
ggacaccgtgtacttctgttttcacagactcagcaaatgcttgacatcctcgagagcttc
ttggttgcaaatgagtatagttaccggaggatggatggtcttacacccgtgaaacagaga
atggctttaattgatgagtttaataattcagatgatgtgtttgttttcgttctgacgaca
aaggtgggtggtttgggaacaaatttgactggtgcgaacagggtcattatctttgacccg
gattggaacccctcaaatgatatgcaggcaagggaacgagcatggcgtattgggcagaag
aaggatgttaccgtttacagattgatcactcgaggcacaattgaggagaaggtatatcat
agacagatttataaacattttctcaccaataagatcttgaagaatccacaacagagaaga
ttcttcaaagctcgggatatgaaagatcttttcatcctgaaagatgatggcgatagcaac
gcctccacggaaacctctaacattttcagtcagctggctgaagagataaacatcgtagga
gctcaatcagataaaaaacctgaatccgctacacaactcgctcttcacaatactgcagag
ggatcctcggagcaaacagatgtggaaacgactgataaaactggtgaagccatggatgaa
gagacaaatatcttaaagagtctctttgacgcacatggaatacatagtgctgtgaatcac
gacaccattatgaatgcaaacgatgaggaagagaagatgagacttgaacaccaagcatct
caagtggcaagaagagctgcagaagcattgcgcgaatcacgaatgctgcgtagccgcgaa
agcatctcagtgcccacatggacgggaagatctggttgtgcaggtgcaccatcatctgta
cggaggagatttggatcaactgttaattcccggttaacccagagtggagacaaaccatca
gtgatcaagaacggaatcagtgcgggtctatcttcaggcaaagcaccatcttccgcagag
cttctcaacagaatacgcggaagcagagaacaagccattggtgttggccttgagcagcta
ccgtcttcttcgggttcaagcagcagagtaggttcgttgcagcccgaggtcctgatccga
aagatatgcagctttgtacagcaaaaaggtggaagtgcggacacgaccagcatcgtcaac
catttcagggacatagtttcttttaatgacaagccgttgtttaagaatctcttgagagag
attgcaacgcttaagaaggatcaaaatagatcgttttgggtcctcaaaacagagtataaa
gattaa
DBGET
integrated database retrieval system
