KEGG   Arabidopsis lyrata (lyrate rockcress): 9322644
Entry
9322644           CDS       T01578                                 
Name
(RefSeq) splicing factor U2af large subunit B isoform X2
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9322644
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aly03041]
    9322644
Spliceosome [BR:aly03041]
 Complex A
  U2 snRNP components
   U2 related factors
    9322644
 Complex B
    9322644
SSDB
Motif
Pfam: RRM_1 RRM_MUD2_C RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 9322644
NCBI-ProteinID: XP_002888120
UniProt: D7KW76
LinkDB
Position
Unknown
AA seq 590 aa
MMTYEGNGDGVAISTENHSENYISLESSPFQSLGGEDGHEDSKSRESHDLEKDSSKISEK
DRDKDPEKDRDREKSRDRDREKSRDRDRERSKDRERDRHHRDRHRDRSRERSEKRERERD
DLDDDHHRHRSRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSQS
RSRSKSKRRSGFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFPNMFPMVPGQQLGALP
VLPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYIN
HEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLA
AVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYA
FCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGVIQPKPEQEEVLLHAQQQIALQRLM
LQPGGTPTKIVCLTQVVTADDLRDDEEYADIMEDMRQEGGKFGNLVNVVIPRPNPDHDPT
PGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYLQGDYED
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgatgacttacgaaggtaacggagatggcgtcgctatttccaccgaaaaccacagcgaa
aactacatatctctagagagctcgccttttcagtccctcggtggcgaggatggtcatgaa
gactccaagtctcgagaatctcatgatcttgaaaaggattcttcgaaaatcagtgagaaa
gacagagacaaagatcctgagaaggatcgtgatagggagaagagcagagacagagatagg
gagaaaagcagagatagagatagggagagaagtaaggatagggaacgagaccgccatcat
agagatcgtcatagggaccgtagcagagaacgtagtgagaaaagagaacgtgagagagat
gatttggatgatgatcatcatcgtcacagaagtcgtgacaggaggaggtctcgcgatcga
gacagagaggtgagacacaggcgacggtcacgctctcggtcaaggagccgctctgaacgc
aggtcaaggtctgaacataggcataagtctgaacatagatcacgttcacgctcacagtcg
cgatcaaggtcaaaaagcaagaggagaagtggatttgatatggcgcctcctgatatgtta
gctgctactgctgttgctgcggcaggccaggttcctagtgtgccaactactgctactatt
ccagggatgttcccaaacatgttcccaatggtccctggtcagcaactgggtgcacttcct
gtactgcctgttcaggcaatgactcagcaggcaactaggcatgctcggcgagtctatgtt
ggtggccttccaccaactgcaaatgaacagtcggtggcaacgttctttagccaagtgatg
tcggccattgggggaaacactgctgggccaggtgatgcggtggtcaatgtttatataaac
cacgaaaagaagttcgcttttgttgagatgagatctgttgaggaggctagtaacgcaatg
gcattagacggcattatattagagggagttcctgtaaaggtgagaaggccaactgactat
aacccgtcccttgctgcaactcttggtccgagtcagcctaaccccaacctcaacttggcg
gctgttggattgtcttcggggtctactggtgggcttgagggtcccgaccgcatttttgtg
ggcgggcttccctattacttcacagaggttcaaatcagggagctcttggagtcttttggg
cccctaagaggtttcaacttggtcaaagacagggaaactggaaattcgaagggatatgca
ttctgtgtttaccaagatccgtcagtaactgatattgcatgtgccgctctaaacgggatt
aagatgggtgataagacacttacagttaggcgtgcaatccagggtgtgattcaacctaaa
cccgagcaagaagaagtcttacttcatgcccaacaacagattgctttgcagaggcttatg
ttacaaccaggaggcactcccaccaagattgtctgtttgactcaagtggttacagctgat
gatcttagagacgatgaagaatatgcagacataatggaggacatgagacaagaaggtgga
aaattcggtaacttagtgaatgttgtgattccaaggcccaatccagatcatgatccaaca
ccaggagttgggaaggttttcttagagtatgcggatgtggatggctcatcaaaggccaga
tcggggatgaacggaagaaaatttggaggaaaccaagtggtggctgtgtattaccctgaa
gacaagtatttgcaaggcgactacgaagactga

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