Arabidopsis lyrata (lyrate rockcress): 9323015
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Entry
9323015 CDS
T01578
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9323015
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9323015
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
9323015
NCBI-ProteinID:
XP_002888425
UniProt:
D7KSD3
LinkDB
All DBs
Position
Unknown
AA seq
397 aa
AA seq
DB search
MALFLSFVRVFSIVITIIMSHFGQFDARTSLNVLSFGAKPNGMVDSVKAFSDAWDAACGV
ADSVVIYVPKGRYLVSGEVRFEGESCRSREITLRIDGTLIGPQDYNLLGKKENWFSFSGV
HNVTILGGSFDAKGTTLWNCKANGYNCPEGATTLRFMDSYDVKIKGVLSLNSQLFHIAIN
RCRNIKIEDVRIIAPDESPNTDGIHIQLSTDIEVQNASIKTGDDCISIGPGTKNLMVDGI
TCGPGHGISIGSLAKSTEEQGVENVTVKRAVFVRTDNGLRIKSWPRHSNGFVERVRFLGA
LMVNVSYPILIDQNYCPGDSSCPSQESGIKINDVIYSGIKGTSATKVAIKMDCSEQVPCT
GIRMQAINLNYYGEAAETSCTNVSGKQLGLVTPSGCV
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcattgtttctaagctttgttcgggtctttagcatcgttataacaatcattatgtcc
cactttggtcagtttgacgcaagaacaagtcttaacgttctgagttttggcgcaaaacca
aatggcatggtagactcagtaaaagccttttcagatgcatgggatgccgcatgtggagtg
gcagattcagtcgtaatttacgtaccgaaaggaaggtatttggttagtggggaggttcgg
ttcgaaggagaaagttgcagaagccgtgagataaccctaaggattgatgggactttaatt
ggtcctcaagactacaatttgcttgggaaaaaagaaaattggtttagttttagtggtgtt
cacaatgttacgattcttggaggttcttttgatgctaagggaacaaccttgtggaattgc
aaagccaatggttacaattgccctgaaggtgcaacgacattgagattcatggactcatac
gacgtgaagatcaaaggagtattatcattgaatagccaattattccacatagcaataaac
cgttgcagaaacataaagattgaagatgtccgaatcatagcaccagatgagagtcctaac
acagatggcattcacattcaattatctaccgatatcgaagtccaaaatgcttccatcaaa
accggtgacgattgtatctcgatcggacccggtacaaagaaccttatggttgatgggatc
acttgcggtcctggacatgggattagcattgggagcttagcaaagtccacagaggagcaa
ggcgtagaaaatgtgactgtgaagagggctgtgtttgtacggacggacaatggactaagg
ataaagtcgtggccacgacatagcaacgggttcgtggagagggttcggttcttaggggct
cttatggttaatgtctcatatcctatcctcattgatcagaactattgccctggcgattct
tcttgcccttctcaggagtcgggaatcaaaataaacgatgtaatatacagtggaataaag
ggaacgtcggccacaaaggttgctataaagatggattgcagtgagcaagtcccatgcact
gggattcgaatgcaggcaattaatctaaattattatggtgaagcagcagagacttcttgc
acaaatgtttctggtaagcaacttggtttggttacacctagtggatgtgtctga
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