Arabidopsis lyrata (lyrate rockcress): 9323086
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Entry
9323086 CDS
T01578
Name
(RefSeq) THO complex subunit 4C
KO
K12881
THO complex subunit 4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9323086
09122 Translation
03013 Nucleocytoplasmic transport
9323086
03015 mRNA surveillance pathway
9323086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9323086
03041 Spliceosome [BR:
aly03041
]
9323086
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9323086
TREX complex
9323086
Spliceosome [BR:
aly03041
]
Complex C
Other components
EJC/TREX
9323086
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
9323086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
9323086
NCBI-ProteinID:
XP_020890184
LinkDB
All DBs
Position
Unknown
AA seq
293 aa
AA seq
DB search
MSDALNMTLDEIVKKSKSARSAAARSGGKGVSRRGRGRGGPNGVVGAGRGGGPVRRGPLA
VNARPSSSFSINKLARRKRSLPWQNQNDLLEESLRAVGVSGVEVGTTVYITNLDQGVTNE
DIRELYTEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDALQAMRKYNNVLLDGRPMRLEI
LGGSAEAAPVAARVNVTGLNGRMKRSVFIGQGIRGGRVGRGRGSGPSGRHLPIQQNQQGV
VKGGRGGFRGRGRGNTGGRGNKSGRGGKKAVEKSAADLDKDLESYHAEAMNIS
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgctttgaatatgactcttgatgaaattgtcaagaagagtaagtctgcaagg
tctgcagctgcaagatctggaggtaaaggagtttcgcgccgtggacgtggacgtggtgga
cctaatggtgttgtaggagctggaagaggaggtggacctgttcgtagaggtcctcttgct
gttaatgctcggccatcttcctccttctcgataaacaagcttgcccgcaggaagaggagc
ttgccatggcagaatcagaatgatttgcttgaagaaagcctgagagctgttggggtatcg
ggagtggaagtcggaaccacagtttatattaccaaccttgatcagggagtgacaaacgaa
gatataagggaactctatactgagattggagagctgaaaagatatgcaattcactatgac
aaaaatgggcgtccaagtggatcggctgaagttgtgtatatgagaagaagtgatgcatta
caagctatgaggaaatacaacaatgtactcttggatggaaggcctatgagactggagatt
ttgggtggaagtgctgaggctgctcctgttgcagctcgtgttaatgtgactggattgaat
ggaaggatgaagaggagtgttttcattggacaaggaattagaggtgggagagtaggaaga
ggaagaggttcaggtccttctgggagacaccttccaatccagcaaaaccaacaaggagtt
gtgaaaggtggtcgaggcgggttccgtggtagaggccgaggtaatactggtggcagaggg
aataaaagcggccgaggtggaaagaaggcggtggagaagtctgctgcagacctggacaaa
gatctcgaaagctatcatgctgaagcaatgaacatctcttaa
DBGET
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