KEGG   Arabidopsis lyrata (lyrate rockcress): 9323086
Entry
9323086           CDS       T01578                                 
Name
(RefSeq) THO complex subunit 4C
  KO
K12881  THO complex subunit 4
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013  Nucleocytoplasmic transport
aly03015  mRNA surveillance pathway
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9323086
  09122 Translation
   03013 Nucleocytoplasmic transport
    9323086
   03015 mRNA surveillance pathway
    9323086
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9323086
   03041 Spliceosome [BR:aly03041]
    9323086
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     9323086
    TREX complex
     9323086
Spliceosome [BR:aly03041]
 Complex C
  Other components
   EJC/TREX
    9323086
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    9323086
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 9323086
NCBI-ProteinID: XP_020890184
LinkDB
Position
Unknown
AA seq 293 aa
MSDALNMTLDEIVKKSKSARSAAARSGGKGVSRRGRGRGGPNGVVGAGRGGGPVRRGPLA
VNARPSSSFSINKLARRKRSLPWQNQNDLLEESLRAVGVSGVEVGTTVYITNLDQGVTNE
DIRELYTEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDALQAMRKYNNVLLDGRPMRLEI
LGGSAEAAPVAARVNVTGLNGRMKRSVFIGQGIRGGRVGRGRGSGPSGRHLPIQQNQQGV
VKGGRGGFRGRGRGNTGGRGNKSGRGGKKAVEKSAADLDKDLESYHAEAMNIS
NT seq 882 nt   +upstreamnt  +downstreamnt
atgtcagacgctttgaatatgactcttgatgaaattgtcaagaagagtaagtctgcaagg
tctgcagctgcaagatctggaggtaaaggagtttcgcgccgtggacgtggacgtggtgga
cctaatggtgttgtaggagctggaagaggaggtggacctgttcgtagaggtcctcttgct
gttaatgctcggccatcttcctccttctcgataaacaagcttgcccgcaggaagaggagc
ttgccatggcagaatcagaatgatttgcttgaagaaagcctgagagctgttggggtatcg
ggagtggaagtcggaaccacagtttatattaccaaccttgatcagggagtgacaaacgaa
gatataagggaactctatactgagattggagagctgaaaagatatgcaattcactatgac
aaaaatgggcgtccaagtggatcggctgaagttgtgtatatgagaagaagtgatgcatta
caagctatgaggaaatacaacaatgtactcttggatggaaggcctatgagactggagatt
ttgggtggaagtgctgaggctgctcctgttgcagctcgtgttaatgtgactggattgaat
ggaaggatgaagaggagtgttttcattggacaaggaattagaggtgggagagtaggaaga
ggaagaggttcaggtccttctgggagacaccttccaatccagcaaaaccaacaaggagtt
gtgaaaggtggtcgaggcgggttccgtggtagaggccgaggtaatactggtggcagaggg
aataaaagcggccgaggtggaaagaaggcggtggagaagtctgctgcagacctggacaaa
gatctcgaaagctatcatgctgaagcaatgaacatctcttaa

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