Arabidopsis lyrata (lyrate rockcress): 9323190
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Entry
9323190 CDS
T01578
Name
(RefSeq) DNA polymerase zeta catalytic subunit isoform X1
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
9323190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
9323190
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
9323190
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
9323190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
POL3_N
REV3_N
zf-C4pol
DNA_pol_B_exo1
DZR_2
Anillin_N
Motif
Other DBs
NCBI-GeneID:
9323190
NCBI-ProteinID:
XP_020890213
LinkDB
All DBs
Position
Unknown
AA seq
1910 aa
AA seq
DB search
MIRGSGQSPGEAAMADSQSGSNVFSLRIVSIDYYMASPIPGYDICYSSFQGGEVNEVPVI
RIYGSTPAGQKTCLHIHRALPYLYIPCSEIPLEHHKGADGSTLALSLELEKALKLKGNAA
SKRQHVHDCEIVRAKKFYGYHSTEEAFVKIYLYHPPDVARAASLLLAGAVLGKSLQPYES
HIPFILQFLVDYNLYGMCHVHISKMKFRSPVPHHFLPRRFDLEDCAGQRIDEVAITKQAN
SSAAASVSFPIWSLSTIPGQWMWNISEESDTPLSQSQHRHYYRRQSLCELEGDATITDIL
NQQFKMYNSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLKTMSDY
VGFENMLKEMHNEVDLSQSDMKPTAVSSAGPDRHAKPEISDLQVLNHMVGTSSKFPASEQ
LSPLGERNGEASMENDEYMKTPMDRDTPAEIQDAEALGLFKWFASSQAAEDINSDDEILR
ETILSPLLPLASINKVLEMASTDYVSQSQKECQDILDSQEDLPDFGSSTKRALPSNPDSQ
NLITSSDKQSLETEVASDVPDISTSNGASENSFQRYRKSEVMENKNRSYSKSNKPSNSVW
GPLLFTLTKNLQNDFDSTNTSDKLGLTKINSDHPMNETTDKYNVPVKEHQADVCNSIDKN
VLAGCSLRDLMRKKRLCHGDSPVSQHMKFRKVLPQSRDSPHGEKKQCTLRSEAEKQGPAL
SAEFSEVDYGDAPSTLSPIDDGTCECNISTQMTELHSVGRCSAKETAFQNSDEVVRNFSF
TTVSLGKDPQTVESGTLVSSNKLLGIEIDDVQKSGREQESTANEIVETGRLICLTLSKKP
PSVDCLSSGLHDSGHSHDILAQFHHAREKQHDGCEGNSKDIPFFPLEDTGINKDGNKHFF
QGASLGIPLHHLNDGSNLYLLAPALSPPSVDSVLQWIAEDKGPGDYNIDSEKQPLEDDHI
DRGASFTDLASASNVVSVSEHVQHHNNVFVNSESNTYTESEIDLKRRGTFLNLNSQISQE
MSQISGPDGKSGPTPLSQMGFRDPASMGAGQQLTVLSIEVHAESRGDLRPDPRFDSVNVI
ALVVQNDDSFVAEVFVLLVSPDSIDQRNVDGLSGCKFSVFLEERQLFSYFIETLCKWDPD
ILLGWDIQGGSIGFLAERAAQLGIRFLNNISRTPSPTTRNDSDNKRKLGKNLLPDPLVAD
PAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKIPS
IPYKVLTEWFSSGPAGARYRCIEYVVRRTNLNLEIMSQLDMINRTSELARVFGIDFFSVL
SRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDF
QSLYPSMIIAYNLCFSTCLGKLAHLKMNTLGVSSYSLDLGVLQDLNQILQTPNSVMYVPP
EVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAG
FSGRMPCAELADSIVQCGRSTLEKAISFVNANDSWNARVVYGDTDSMFVLLKGRTVKEAF
VVGQEIASAITEMNPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQNEPIFDAKGIETV
RRDTCEAVSKTMEQSLRLFFEKKSISKVKSYLYRQWKRILSGRVSLQDFVFAKEVRLGTY
STRDSSLLPPAAIVATKSMRTDPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDID
TPYRLNDLYYINKQIIPALQRVFGLLGADLNQWFLEMPRLTRSSLGQRPLSSKNSHKTRI
DYFYLSKHCILCGEVVQESAQLCNRCLKNKSAADATIVWKTSKLEREMQHLATICRHCGG
GDWVVQCGVKCNSLACSVFYERRKVQKELRGLSSIATESELYPKCMAEWF
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atgattcgtggttccggtcaaagtcccggcgaagcagccatggctgattctcagtccggt
tccaatgttttcagcttaaggattgtttcaatagattattacatggcttctcctatccct
ggttatgatatttgctacagtagcttccaaggtggtgaggtaaacgaagtccctgttata
aggatatatggctctacacctgctggtcagaagacttgcctgcacattcatcgtgcttta
ccatatctctatattccatgctcggagattccacttgagcatcataaaggagctgatgga
agtacacttgctttatcccttgagttagagaaggctctaaagcttaagggcaatgctgct
tcaaaaaggcaacatgtccatgattgtgagattgttagagcaaagaagttttatgggtac
cactcaactgaggaggcttttgtgaagatttatctctaccatccacccgatgtggctcgt
gctgccagtcttcttctggcaggtgctgttcttggtaaaagtttgcagccttacgagtct
catattccttttattctccagtttctggttgattataatttgtatggaatgtgtcatgtg
catatatcaaagatgaagttccgtagcccagttcctcaccatttccttccaaggagattt
gatttggaagattgtgcgggacaaaggattgacgaagtggctataacaaagcaggcaaat
tcaagtgctgctgcaagcgtcagttttcctatttggagcttgtcaacaatcccaggtcaa
tggatgtggaatatctcagaagaatctgatacaccgttgagccagagccagcataggcac
tattacagacgtcagagtctctgtgaacttgagggagatgctactattactgatattctc
aatcaacagtttaaaatgtacaactccctttcacaagcccagtctgatactaacatggtt
cagtcgcttgtggcaatttgggaggaggaatatgaaaggactggcgtgcatgatgcacct
atacctcctgatcctggcaaaccatctgcagcagatgtgttgaagactatgtcagattat
gttgggtttgagaatatgcttaaagaaatgcataacgaagttgacttgtctcagtctgat
atgaagcctactgcagtatcttcagccggtccagataggcatgccaaacctgaaattagt
gatctgcaggttttgaatcatatggttggtacaagcagtaagtttcctgcatcagaacag
ctttctccacttggtgagaggaatggagaagcatcaatggaaaatgatgaatatatgaaa
acacccatggacagagatacacctgctgaaatacaagatgctgaagccttgggtctcttt
aagtggtttgcctcatcccaggctgcagaggacataaactctgatgatgaaattctccgg
gaaactatccttagtcctcttttgcctttagcttccattaacaaggttcttgaaatggct
agtacagattatgtgagccaatcccaaaaggaatgtcaagacattcttgattctcaggaa
gatctaccagacttcgggagttcaacaaagagagctttacctagtaatcctgatagccag
aatcttataacttcatcggacaaacaatctcttgaaacagaagtcgctagtgatgttcca
gatatctccacttcaaatggcgcaagcgaaaattcattccagagatacagaaagagtgaa
gtaatggagaataagaacaggagctactctaagagcaacaagcctagcaactcagtatgg
ggacctttactttttacactgaccaaaaatcttcagaatgactttgacagtacaaatact
agtgataaacttggtttaacaaagattaattcagaccaccccatgaatgagacgacagac
aaatataatgttccagtcaaagaacatcaagcagatgtttgtaattcgattgacaaaaac
gttttggctggatgttctctgcgggacttgatgaggaaaaaacggttatgccatggagac
tcgcctgtttcacaacatatgaaatttagaaaggttctaccacagtctagagattcacca
cacggggaaaaaaagcagtgcaccttgagatctgaggctgaaaaacaaggtcctgctctt
tctgcagaatttagtgaagttgattatggcgatgctccttcaactttatctcctatagat
gatggaacttgtgagtgtaatatatccactcagatgactgaacttcattccgttggtaga
tgttcggctaaagagacggcatttcaaaacagtgatgaagttgtaaggaatttttcattt
accactgtttcacttggtaaggatccacaaactgtggaatcaggaacattagtgtctagc
aataaacttcttgggattgaaatagatgatgtccaaaaatcggggagggagcaagagtca
actgccaatgaaattgttgagacaggaagattaatatgcctaaccttaagcaagaagcct
ccttctgtggattgcctaagttctggactgcacgattctggacattctcacgatattctc
gcccaatttcatcatgccagggaaaaacagcatgatggatgtgaggggaattccaaggac
atcccattttttcccttggaggacaccggaatcaacaaggatggaaataaacactttttc
caaggagcttcccttggtattcccttgcatcatctcaatgacggctcaaatctttaccta
ctggcccctgccttgtcacccccttctgtggattctgttttacaatggatagcagaagac
aaaggtccaggagactataatattgattcagaaaaacaaccattagaagatgatcatatt
gatcgtggggcaagtttcactgatcttgcttctgcatctaatgtggtgtctgtgtctgag
cacgtgcagcatcataataacgtttttgtgaattcagaatcaaatacttatacagagtct
gagatagatctgaaacgtagaggaacgtttcttaatcttaactctcagatttcccaagag
atgtctcagatttcaggtcctgatgggaaatcagggcccactcccttaagtcaaatggga
ttccgagatcctgcgagcatgggggctgggcaacaacttacagtgctgagtatagaggtt
catgcagagtctagaggggacctgcgacctgatccacgatttgattctgtcaatgtcata
gctctcgtcgtgcagaatgacgatagttttgtagctgaagtatttgtgcttttagttagt
ccagatagcattgatcagagaaatgttgatggcctatctggatgcaagttttctgtattc
cttgaagagaggcaactattcagttattttattgagactttgtgtaaatgggatccagat
attcttctgggatgggatatacagggtggatccattggttttctagctgaaagggctgcc
cagcttggcataagatttctcaataatatatctaggacgccatctccgaccacgagaaac
gattcagataataagagaaagcttggtaaaaatctgctgccagatcctttggtagctgat
cctgctcaagtagaagaagtggtaattgaggatgagtggggccgcacacatgctagtggt
gttcatgttggaggtagaattgttctcaatgcatggcgtttgattcgcggggaagttaaa
ctcaacatgtacacaattgaagctgtgtcggaggctgttttgaggcagaagattccatcc
atcccctataaagtattgacagaatggttttcaagtggtcctgcgggggcaagatatcga
tgcatagaatatgtggttcgccgaacaaatttgaaccttgagataatgagtcaacttgac
atgataaatcgtacatcagaacttgctcgtgtttttggcatagactttttctcagttctc
tcccgaggttcccaatacagagtggaatctatgcttttgagattagcgcacacacaaaat
tatcttgctatatctccaggaaaccaacaggttgcttctcagccagctatggaatgtgta
cctcttgtgatggaaccagaatctgccttctacgatgatcctgttattgtgttggatttt
caatctctttacccttcaatgattatagcatataatctgtgtttttctacgtgtcttgga
aaacttgcacatttgaagatgaacacccttggggtcagctcatactctctagaccttggt
gttcttcaggatttaaatcaaatcctgcagaccccaaacagtgtgatgtatgtgccacca
gaggtgcgcagaggaattttacctaggctgctagaggaaattctatctacaagaataatg
gtgaaaaaagcaatgaaaaagttgactccttcagaagcagttcttcaccggatatttaat
gcaaggcagcttgctttaaagctgatagcaaatgttacttatggctatactgctgctggc
ttcagtggtcgaatgccttgtgcagagctggcagatagtattgtccagtgtggtcgtagc
acacttgagaaggctatttcgtttgtcaatgccaatgatagttggaacgctagagttgta
tatggtgacactgatagtatgtttgtcctcctcaaaggacgaactgtaaaagaagctttt
gtagtcggacaagagattgcatctgcaataactgaaatgaatccacacccagtcacttta
aagatggagaaagtctatcacccttgtttccttcttacgaagaagcgctatgttgggtac
agttatgaaagtcccgatcagaacgagcctatatttgatgcaaaaggtattgaaactgtt
cgaagagacacttgtgaagctgtttcaaaaactatggagcaatcgttgagactctttttt
gagaagaagagcatctctaaggttaagtcgtacttgtatagacagtggaagcggatacta
tcagggagagtgtctctacaagattttgtctttgcaaaagaagttcggttggggacttat
agcacaagagactcttcactccttcctccagctgctattgtggcaaccaaatcaatgaga
acagaccctcggacagagccacgctatgcggaacgagtgccttatgttgtgatccatggg
gagccaggagctcgacttgttgatatggtggtggacccactggttcttttggacattgat
acaccctaccgattgaatgacttatactacatcaacaaacaaattataccggctttgcaa
agggtatttggactcctgggtgcagacttaaaccagtggtttttggagatgccccgtctc
accagaagctcccttggtcaacgtcccttaagctctaaaaactcacacaaaacgagaatt
gattatttttatctctcgaaacattgcatcttgtgtggggaagttgttcaagaatctgct
cagctatgcaaccggtgcctcaaaaataaaagtgctgctgatgcaaccattgtttggaag
acttcaaaattggagagagagatgcaacacctagccacgatatgcagacactgtggtggg
ggagactgggtggtgcaatgcggagtgaaatgcaattcccttgcttgctcagtcttttac
gagagacggaaagttcagaaagagcttcgtggcctctcctccattgctactgagagtgag
ctttaccctaaatgcatggctgagtggttctaa
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integrated database retrieval system
