Arabidopsis lyrata (lyrate rockcress): 9323451
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Entry
9323451 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9323451
09123 Folding, sorting and degradation
03018 RNA degradation
9323451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9323451
03041 Spliceosome [BR:
aly03041
]
9323451
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9323451
mRNA cycle factors
Stress granule specific factors
9323451
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
9323451
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_RdRP1_2
RRM_7
RRM_occluded
RBD_DEAH11
RRM_MARF1
RRM_Nup35
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
9323451
NCBI-ProteinID:
XP_002888846
UniProt:
D7KYX9
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MAAAVASGIAPTTAMVDQVPNQPTVAAAPPPPFPAVSQIAAVAAAAAAAEALQTHPNSSL
YVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSLNY
APIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMDA
VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNV
YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNG
ISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEM
FSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFAQRKE
ERRAHLQTLFTHIRSPGTMSPIPSPMPGFHHHPPGGPMSGPHHPTMYIGQNGQGLVPPQP
MGYGYQVQFMPGVRPGAGPANYMMPFPLQRQTQPGPRVGFRRGANNMQQHFQQQQILQQN
ASPGMRYMGGAGNRRNGMEASAPQGIIPLPLNASAISHNAPQHPHKPPLLTISKLASDLA
LAPPEKHPQMLGENLYPLVAQQEPEYAAKVTGMLLEMDQAEILHLLESPEALKAKVSEAL
DVLRLSANAPAVSSVDDQFALSSTE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggcggttgcatctggaattgccccgacgacggccatggttgatcaagttccc
aatcaaccgacggttgctgctgctcctcctcctcctttccctgccgtgagtcagattgcg
gcggttgcggctgctgctgctgccgcggaggctttgcaaacgcatccaaactcgtctctc
tatgtcggagatttagatccgagtgtcgatgagccacaactgttggatctctttaatcaa
gttgctccagttcagactgttagggtttgtcgtgatttgactcgtcgttctcttggttac
gcttacgtcaatttcgctaaccctgaagatgcgagtcgtgcgatggatagtctcaactat
gctccgatcagggacaggcctataaggatcatgctctcgaatcgtgatccgagcactcga
ttgagtggaaaaggcaatgttttcatcaaaaacctcgatccatcgatcgataacaaagct
ttgtatgaaacattctcggctttcgggactatcctctcttgcaaggttgcaatggatgcg
gtgggacgttcgaaaggatatggctttgtccagtttgagaaagaggaaaccgctcaggct
gctattgacaagcttaatggcatgttgcttaatgataagcaagtctttgttggccatttt
gttcgacgtcaggacaggtctcgtagtgagagtggtgcggtgccgcgtttcactaatgtt
tatgttaagaatcttcctaaggagattactgatgatgagcttaagaagacttttgggaaa
tatggagatatctctagtgcggttgtgatgaaagatcagagtgggaactcgaggtctttc
gggtttgtgaactttgagagccctgaagctgctgccgttgcggttgaaaagatgaacggt
atcagccttggggaggatgtgttgtatgttgggagggcacagaagaagtctgagagggaa
gaggaattgaggagaaagtttgagcaagagaggataagcaggtttgagaaattacaagga
tcaaatctgtatttgaagaaccttgatgatagcgtgaatgatgagaagctcaaggagatg
ttctctgagtatgggaacgtgacctcctgcaaggttatgatgaattcacaaggtttgagc
agaggctttggttttgttgcttactccagtcctgaagaagcttcgagagctttgagtgaa
atgaatgggaagatgataggaaggaaacctctttacgttgcttttgctcaacgcaaagaa
gaaagacgggctcaccttcagactctatttactcatatcagatcacctgggacaatgtcg
ccaattccatcaccaatgcctgggttccatcatcacccaccaggagggccaatgtcagga
ccacaccacccaacaatgtacataggtcagaatggtcaaggtctggtacccccacaacct
atggggtatgggtaccaagttcagttcatgcccggggtgcgtccaggtgcaggcccggct
aactacatgatgcctttccctcttcaaaggcaaactcagcctggtcctcgtgttgggttc
aggcgtggtgctaataacatgcagcagcacttccaacaacaacaaattctgcagcaaaat
gcaagcccgggaatgcgatacatgggaggcgcaggcaacaggaggaatggaatggaagca
tctgctccacaaggcatcatccctttgccattgaatgcatctgcaatctctcacaatgct
cctcaacacccgcataagccacctctcctcaccatttccaagcttgcatctgatttggct
ttggctcccccggagaaacacccacagatgcttggggagaacctttacccacttgtggcg
cagcaggagccagaatatgcggccaaagttactgggatgttgctggagatggatcaagct
gagattttgcaccttcttgagtcacctgaagctcttaaggctaaagtttccgaggctctg
gatgttctcagactctctgctaatgcaccagctgtgtcatctgttgatgaccagtttgct
ctatcctcaaccgagtga
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