KEGG   Arabidopsis lyrata (lyrate rockcress): 9323565
Entry
9323565           CDS       T01578                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aly03041]
    9323565
Spliceosome [BR:aly03041]
 Complex B
  Other components
   Complex B specific factors
    9323565
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 NBCH_WD40 LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_ACSF4 Beta-prop_VPS8 Ge1_WD40 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N DUF7165 Beta-prop_WDR19_1st Beta-prop_HPS5 RMC1_N Beta-prop_IP5PC_F VPS8_N zf_topless
Other DBs
NCBI-GeneID: 9323565
NCBI-ProteinID: XP_020890525
LinkDB
Position
Unknown
AA seq 512 aa
MALEIEARDVIKIMLQFCKENSLNQTFQTLQSECQVSLNTVDSVETFISDINSGRWDSVL
PQVSQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRMEHL
LVRSYFDPHEAYGDSTKERKRAQIAQAVAAEVTVVPPSRLMALIGQALKWQQHQGLLPPG
TQFDLFRGTAAMKQDVEDTHPNALTHTIKFGKKSHAECARFSPDGQFLASSSVDGFIEVW
DYISGKLKKDLQYQADETFMMHDDPVLCIDFSRDSELLASGSQDGKIKIWRIRTGLCIRR
FEHAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNNAIFTSDG
SRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGGDASVNSIHLFPKNTEHIVVCNKTSS
IYIMTLQGQVVKSFSSGNREGGDFVAACVSTKGDWIYCIGEDKKLYCFNYQTGGLEHFMM
VHEKDVIGITHHPHRNLLATYSEDCTMKLWKP
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggcgctcgaaatcgaagctcgagatgttataaagattatgcttcagttctgcaaagaa
aactccttgaatcagacattccagacattacaaagcgaatgtcaggtttctttaaataca
gtagacagcgtcgagacgtttatttctgatattaatagtggaagatgggactcagtacta
cctcaagtttctcagcttaaacttcccaggaataaactagaagacctttatgaacagatt
gtattggagatgatagaacttcgagagttggacactgcccgagctattttgagacagact
caggtgatgggtgtcatgaagcaggagcaaccagaaagatatttgcggatggagcatctt
ctagtcagaagctattttgatccgcatgaggcttatggagactcaactaaagaaagaaaa
cgggcacagattgctcaagctgtggctgccgaggttaccgtggtaccaccttcacggcta
atggctttgataggtcaggctttaaagtggcaacaacatcaaggtctgctccctccagga
acacagtttgacctctttcgtgggacggcagctatgaaacaagatgtagaagacacacat
cccaatgctcttacacataccataaagtttggtaaaaagagtcatgccgaatgcgctaga
ttctcaccagatggacagtttcttgcctcttcttctgttgatggttttatcgaggtatgg
gattacataagtgggaagctgaagaaggatttgcagtatcaagctgatgaaactttcatg
atgcatgatgatcctgtcctttgcatagattttagcagagattcagagttgcttgcatct
gggtcacaagatggaaagattaaaatctggcgtataaggactggtctatgtatacgtcgt
tttgagcatgcacattcccaaggagttacaagtctttccttctctcgggatggaagccaa
ttactgagtacctcctttgaccaaactgcaagaattcatggtttgaaatctgggaaattg
ttgaaagaatttcgcggtcacacatcttatgtaaataatgccatctttacaagtgatgga
agccgtataatcactgcctccagtgattgtacagtaaaggtctgggattctaagacgaca
gattgtctacaaacattcaagccgccacctccattaaggggaggtgacgcatcagtcaac
tctattcatttgttccccaaaaacacagaacacattgttgtgtgcaacaagacatcatct
atatacatcatgacgctccaaggacaggttgtgaagagtttctcatcgggtaatagggaa
ggaggggattttgtagcagcatgtgtatctacaaaaggagattggatatactgcatcggc
gaagacaagaaattgtactgcttcaactatcaaaccggtggacttgagcatttcatgatg
gtgcatgagaaggatgtgattggtataacacaccatccgcatagaaacctccttgctacc
tacagtgaagattgcaccatgaagttatggaagccctga

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