Arabidopsis lyrata (lyrate rockcress): 9323729
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Entry
9323729 CDS
T01578
Name
(RefSeq) F-box protein SKP2B
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
9323729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9323729
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
9323729
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
LRR_NXF1-5
F-box
F-box-like
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
9323729
NCBI-ProteinID:
XP_020890166
LinkDB
All DBs
Position
Unknown
AA seq
363 aa
AA seq
DB search
MVSEGATRKELNLCFEKMKMEGIVISEWKDIPVELLMRILNLVDDRTVIIASCICSGWRD
AISLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDSAVEAIANHCHELQ
DLDLSKSLKLTDHSLYSLARGCTNLTKLNLSACTSFSDTALAHLTRFCRKLKILNLCGCV
EAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESV
VALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRTVKKGKFDEEGLRSLNIS
QCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRAHRTHTAFPH
PAH
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgaaggagcaacaagaaaggaacttaacctatgcttcgagaagatgaagatg
gaaggaatcgtgatctctgagtggaaagatatccctgtggagcttcttatgaggatccta
aaccttgttgatgatcggacggtgatcattgcttcttgtatttgtagtggttggagagat
gctatttcccttggcctcactcgtctctccctctcttggtgcaagaagaatatgaacagt
ttggttctttctcttgctcccaaattcgttaagcttcagactttagtactgcgacaagac
aaaccgcagcttgaggacagcgcggtggaagccatagcaaatcactgtcatgagctacaa
gatttggacttaagcaaaagcttgaaacttactgaccattccctatattctctggctcgt
ggttgtactaacctcactaaactcaaccttagtgcctgcacttcgttcagcgacactgct
ctcgcgcatttgacaagattttgcaggaagctcaaaattctgaatctttgtggttgtgtt
gaagctgtatctgacaatacattgcaggctattggagaaaactgcaatcagttgcagtca
ctaaacttaggatggtgtgagaatataagtgatgatggagttatgagtttagcttatggt
tgtcctgatttaagaacccttgatctttgtggttgtgttctaattacagatgagagtgtt
gtggctttggcgaatcggtgtatacacttgaggtcattgggattatactactgcagaaac
attaccgacagagcgatgtactctttagctcagagcggagtaaagaacaaacacgagatg
tggcgaacggtaaagaaaggcaaattcgatgaagaaggactaagaagccttaacattagc
caatgcacttacctaacaccttcagcggttcaagcggtctgcgatacattccctgcactc
cacacttgctcaggcaggcattctcttgtcatgagcggttgtcttaatctacaatctgtt
cattgtgcttgtatccttcaggctcaccgggctcaccgcacccacaccgctttccctcac
ccggctcattga
DBGET
integrated database retrieval system