Arabidopsis lyrata (lyrate rockcress): 9323741
Help
Entry
9323741 CDS
T01578
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
9323741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aly03032
]
9323741
03400 DNA repair and recombination proteins [BR:
aly03400
]
9323741
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
9323741
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
9323741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
ECT2_BRCT0
TopBP1_BRCT0
Motif
Other DBs
NCBI-GeneID:
9323741
NCBI-ProteinID:
XP_020890499
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MKTTQLFRGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSGPSDFHVIASPDH
EKFKDLKAKGCNLIGPQCALSCAKEGRPLPQGGFTCCLAMDGLKVLASGFLIDEKAMIKE
LVTSMGGVLLSKASSDVNFVIVKNVLAAKYKWALNKKPIVTLNWLHRCWNEHRVVPQEPY
KIPPFSGLTICVTRIPADERKGMEKVISEYGGNYSAELTKSCTHLIADAAEGDKYKVARK
WGHIQIVTRKWFQQSIDRKVCLNEELYPVLSSIPLTRGVQDLGVHNGQEKFPSVATASAA
DSYASCAQSRDSDIEASGSQNVFSTSTNPSTDVKEPSGGPTTRPQEQNIDGCTARDSESE
DNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREAR
SVAASGVIQVVIPSWLEDCDREKKEIPVHKIYTANHLILPRDSACLTKGSFVGMSSTEQS
KHTSGQTMAYDSSSRSINVSNGTATLLGKNKEAMQEFGRKDEIHTGRKIVSPKQKETLIS
LVTSKSEEQQSTQCEFSGQNKQERKSSVFKGETFCFSHSFPEDRRPDIVEWVNQGGGEVV
NDPLINNARFTIECHGGFRSAGTTQTIYVSSHWVRYCLEVGCLLAVSSHILYSPLPCQTP
LPGFESLCICSSQHKEKDIPLLKNLCVVLGAKYVKKLTRKVTHLLCISADGHKYETASNW
GIVSVTPDWLCECVRQNQVVCPDNFHPKESTTQEAGSGFASHFHTQFVPMASRDNVSLLV
SHSEDREKNQSFAGKSGCGKGALNNRLGEIGKEQAFPSKKAKLLRDGQENNVYPVRELPS
SCDRPSHSGEGIVSGYDVGSGREVPDVADTIEDLLEQTSKIQDQKSPGMISEKTVSLKFM
CSFNLFFFLSNQYLALFDSLMIKQHFSTSEQYNTGNHCVTGLSRHWINRVQKNDDMGSPP
GDVTTGTYGNFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSLT
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgacgcaactgttcagaggggcaaatgtgtttatgtctcggaatctggtacct
cctgaagttttcgacacacttctcgatgctttcaagcttaacggtgccgaaatcttcctc
tgctgcgacccctctcggagcggtccctccgatttccatgtcatcgcatctcccgatcat
gagaaatttaaggatcttaaagccaagggttgtaacttaattggtccgcaatgtgctctc
tcctgtgcgaaagagggtagaccactgccacaaggggggttcacttgttgcctagctatg
gatggtctgaaagttcttgcttctggttttctgatagatgagaaggccatgatcaaggag
ttggttacttccatggggggcgttttactttccaaagcttcttctgatgtcaacttcgtc
attgtgaaaaatgtcttggctgccaagtacaagtgggctctgaataagaagccaatcgtt
acactgaattggttacatcggtgttggaatgagcaccgtgtggttccccaggaaccatat
aagattcctcctttttctggattgacaatttgtgtcacaagaattccagcagatgagcgc
aagggaatggagaaggtaatttcagaatatggagggaactactctgctgagctaacaaag
agttgtacacatttgatcgctgatgctgctgaaggtgacaaatacaaagttgctcgaaaa
tggggtcacattcaaattgtcacacggaaatggtttcagcagtccatcgatagaaaagtg
tgtctcaatgaagagttatatcctgttctcagttccatacccttgacaagaggggtgcaa
gatttgggggtccataatggtcaagaaaagtttccttcggttgcaactgcgtctgcggca
gattcatatgcttcttgtgctcagtctagagactcagatatagaagcttctggttcacaa
aatgttttttccacttctacgaatcccagtaccgatgttaaagaaccaagtggaggccca
actacaaggccgcaagagcaaaatattgatggttgtactgctagggattcagaatccgaa
gacaatgacttgtacttatcagattgtagaattttcttgcttggttttgaagcttctgaa
atgcgtaaacttgctaagttggtccgcagaggtggtggatcccggtatatgctgcttaac
gaaagaatgactcatattgttgttggaactccttctgagagtgagaaaagagaagcgagg
agtgttgcagcctctggtgtcattcaagtagtcatacccagctggcttgaagattgtgat
cgtgagaaaaaagaaattcccgttcataaaatatatactgctaaccacttgattcttcca
agagattctgcatgcttgaccaagggatcatttgtagggatgtcaagtacggaacagagt
aaacatactagcggtcagaccatggcatatgattcgtcttcaaggagtattaatgtctca
aatgggacagcaactttgctgggaaagaacaaagaagcaatgcaggaatttggcaggaaa
gatgagattcatacaggaagaaaaatagtatcacccaagcaaaaagaaacacttatttcc
cttgtaactagtaaaagcgaagaacaacagagtactcaatgtgaattcagtggtcagaac
aagcaagaaagaaagtcatcggtatttaagggggagacattttgtttctcgcattctttt
cctgaagataggcgaccagacatcgtggaatgggtcaatcaaggagggggagaggtggta
aatgatcctttgataaataatgcacgttttactattgaatgccatggtgggttccgaagt
gccgggactacccaaactatctatgtctcaagtcattgggttcgatattgtttagaggtt
ggttgtttacttgctgttagtagtcatatcctctactcacctcttccctgccagacacct
ttgcctggattcgaaagcctttgcatatgtagttcccaacataaagagaaggatatacca
ctcctgaaaaatttgtgtgttgttcttggagcaaaatatgtgaaaaaactgaccaggaaa
gtgacgcacttgctatgcatctctgcagacggacataagtatgagacagcttccaattgg
ggaatagtttccgtgacacctgactggctttgtgaatgtgttagacagaatcaagttgtt
tgtccagataacttccatccaaaggaatcaaccactcaagaagcagggtctggcttcgca
agtcattttcatacacagtttgtgccaatggcctcaagggacaatgtgtctctacttgta
agtcactctgaagacagggaaaaaaatcaaagttttgctggcaaaagcggttgcggtaaa
ggtgcattaaataacagacttggagaaattggaaaggaacaggcttttccgtctaagaag
gcaaaacttttgagagatggtcaagaaaataatgtgtatcctgtgagagaacttccaagc
agttgtgatcgcccttcgcattctggagaaggcattgtgtctggatatgatgtaggaagt
ggtcgtgaagttccagatgtggctgatactattgaggatctgttagagcagactagtaaa
attcaagatcagaagtctcctgggatgatttcagaaaagactgtatccttaaagtttatg
tgctcattcaatcttttttttttcctgagtaatcaatatttggcattgtttgactccttg
atgataaaacagcatttttcaactagtgaacaatacaacaccgggaatcactgtgtcact
ggcctgtctagacactggataaacagggtccaaaagaatgatgacatgggcagtcctcca
ggagatgtaactacaggcacttacggaaactttagtgagacgcagacagaatcacaggtt
gttggttacgaggaagatctttcaggaaggcagatgcttatagacagagttagaacacga
agcagcttaacataa
DBGET
integrated database retrieval system
