KEGG   Arabidopsis lyrata (lyrate rockcress): 9323750
Entry
9323750           CDS       T01578                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
aly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9323750
   03410 Base excision repair
    9323750
   03420 Nucleotide excision repair
    9323750
   03430 Mismatch repair
    9323750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9323750
   03036 Chromosome and associated proteins [BR:aly03036]
    9323750
   03400 DNA repair and recombination proteins [BR:aly03400]
    9323750
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    9323750
  DNA Replication Termination Factors
   ELG1-RFC complex
    9323750
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    9323750
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     9323750
  Check point factors
   HRAD17(Rad24)-RFC complex
    9323750
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 AAA_lid_RFC1 AAA_assoc_2 AAA_22 RCF1-5-like_lid AAA_11 AAA_14 ATPase_2 AAA_16 AAA_5 ResIII RuvB_N DUF815 AAA_19 AAA_30 DNAX_ATPase_lid AAA_3 nSTAND_NTPase5 AAA_7 AAA_24 bpMoxR Cdc6_lid nSTAND3 MCM AAA_28 Mg_chelatase nSTAND6
Other DBs
NCBI-GeneID: 9323750
NCBI-ProteinID: XP_020891160
LinkDB
Position
Unknown
AA seq 369 aa
MTEITSAMDIDVDEIQPRKPINKGKDVAGFGAPPQSKATPWVEKYRPQSLDDVAAHRDII
DTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVR
QQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNK
IIPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSDCGLAALVRLSNGDMRKALNIL
QSTHMASKEITEKESKKITEEEVYLCTGNPLPKDIEQISHWLLNKPFDECYKNISEIKTR
KGLAIVDIVREVTMFVLKIKMPSHVSVQLINDLADIEYRLSFGCNDKLQLGAIISTFTHA
RSIIVDAAK
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgactgagataacgtcggcgatggacattgacgtagacgaaattcagcctcgcaagccg
attaacaagggcaaagatgtcgccggattcggtgctccgccgcagagtaaggcgacgcct
tgggttgagaagtaccgacctcagtcgctcgatgacgtcgctgcacatcgtgacattatt
gatacgattgataggctgaccaatgagaacaaattgccccatcttctcttgtatggtcct
cccggtacaggcaaaacatccaccattctagccgtcgcccggaaactatatggacccaag
taccgtaatatgattcttgaactgaacgcatcagatgatagaggaattgatgttgtaagg
cagcagattcaggatttcgctagcacgcagagcttctctttaggaaaatcttcggtgaag
ttggttctgctagatgaagcagatgccatgacaaaagatgctcagtttgccttgcgtaga
gttattgagaaatacacaaagagtactaggtttgccctcattggaaaccatgtcaataag
atcatcccagctttgcagtcgagatgtactcgatttagatttgctcctcttgatcctctt
catgtgagtcaacgtctgaaacatgtaatagaagctgaagggcttggtgttagtgattgt
ggtttggcagctcttgtacggctgagcaatggagacatgagaaaagcattgaacattttg
cagtcaacgcatatggcgtcaaaggaaattacagagaaagagtcaaagaaaattacagag
gaagaggtttacctctgcaccggaaacccattgcccaaggacattgagcagatatctcac
tggcttctgaataaaccatttgatgagtgctacaaaaacatttcagaaattaaaacgaga
aaaggacttgccattgttgatatcgtcagagaggttaccatgtttgttttaaaaatcaag
atgccttcacatgtcagcgttcaactgataaacgatttggctgacatcgagtacagattg
agttttgggtgcaacgacaaactgcagcttggagctatcatttctacgttcacacatgcc
cggtctatcattgttgatgcagcaaaataa

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