Arabidopsis lyrata (lyrate rockcress): 9323911
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Entry
9323911 CDS
T01578
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9323911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9323911
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
9323911
Complex C
U5 SnRNP specific factors
9323911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
9323911
NCBI-ProteinID:
XP_020890710
LinkDB
All DBs
Position
Unknown
AA seq
2361 aa
AA seq
DB search
MWNNNDGMPLAPPGTGGSMMPPPPAAHPSYTALPPPSTPTPPLEPTPEEAEAKLEEKARK
WMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVP
HAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKR
DRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKT
KLINGPSYRRWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGP
KFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMV
MYIKTEDPDLPAFYYDPLIHPISNTNKDKRERKVYDDDDEDDFALPEGVEPLLKDTQLYT
DTTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYV
LNELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNY
LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLA
DGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR
VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD
AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPVENMILRYVKSKADWWTNVAH
YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVH
WLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPH
EALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL
FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNR
LLRLVLDHNIADYVSAKNNVVLSYKDMSHTNAYGLIRGLQFASFVVQFYGLLLDLLLLGL
TRASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFSHEEARDLIQRYLT
EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV
SVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDD
EHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENK
IQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFR
SGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDR
GIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRF
TLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC
QVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDMFDQ
KASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSA
FGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG
QLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLL
KPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGA
EITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWR
VRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGISPP
DNPQVKEIRCVVMVPQWGSHQQVHLPSSLPEHDFLNDLEPLGWLHTQPNELPQLSPHDVT
SHSRVLENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQTGYEWGRLNKDTGSNPHGYLPT
HYEKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVSMNYSVKLGSPKEYYHEEHRPTHF
LEFSNMEEADIAEGDREDTFT
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgatggtatgcccttagctcctcctggtaccggcggctccatgatg
ccgccaccgcccgctgctcatccttcttacacggctcttccgccgccttctactcctact
cctccgctcgagcctactcctgaggaggcggaggccaagcttgaggagaaggcccgaaaa
tggatgcagctaaattccaagcggtacggcgacaagaggaagtttggattcgtcgaaact
cagaaggaggacatgccacctgagcacgtcaggaagatcatcagggatcatggtgatatg
tcatccaagaagttccgtcacgacaaacgtgtataccttggagcccttaaattcgttcct
cacgcagttttcaagctcttggagaatatgcctatgccctgggagcaggtccgagacgtg
aaggttttgtaccacatcaccggagctattacatttgtgaacgagataccatgggttgtg
gaacctatttacatggctcagtggggtactatgtggattatgatgcgaagggagaagagg
gatcgtcgtcatttcaagagaatgcggtttccaccatttgatgatgaggagcctccacta
gactatgcagacaacttactggacgtggatcctctagagccaattcaattggagctcgat
gaggaagaagattctgctgtgtacacttggttttacgaccacaagccactcgttaaaaca
aaactgattaatggtcccagttaccggaggtggaacctctcacttccaattatggcaacc
cttcacaggcttgcaggccagttactgtctgatttgattgatcgcaactacttctacttg
tttgacatgccatctttcttcacagcaaaggctctgaacatgtgcatccctggtggacct
aagtttgaacctttgtaccgcgatatggagaaaggggatgaggactggaacgagtttaat
gacatcaacaagcttatcattcgttcccctctgcgaaccgagtacagaatagcttttcca
catctctacaataaccggcccaggaaagtaaaactctgtgtgtatcacagtcctatggtt
atgtatataaagaccgaggatcctgatcttcctgcattttattatgatccgttaattcac
ccaataagcaacactaacaaggacaagcgcgaaaggaaggtttatgatgatgatgatgag
gatgacttcgccttaccagaaggagtggaacctttgctaaaagatacccaactctacact
gacactacagctgctggcatatcattgttgtttgccccacgacctttcaatatgaggtct
gggaggactcgccgggcagaagatattcccttggtgtcagagtggttcaaggagcactgt
cctcctgcctatccggttaaagttcgggtcagttaccaaaagttattgaaatgctacgtc
ctgaatgagttgcaccatagaccacctaaagctcagaagaagaagcacttgtttcgatct
cttgcagctaccaagtttttccaaagtaccgaactggattgggttgaagtgggtctgcaa
gtctgtcggcagggatataatatgctgaatctgttgattcataggaagaatttaaactac
ctgcatcttgactacaacttcaacctcaagcctgtgaaaactttgaccaccaaagagcga
aagaagtcacgttttgggaacgctttccatctctgccgtgagatcctgcggctgacaaaa
cttgtagttgatgcaaatgtccaattccgacttggtaatgttgatgccttccaattggct
gacggtctgcaatatattttctctcatgttggccagttgacgggtatgtatcgttataaa
tacagactgatgaggcagattaggatgtgcaaggatttaaagcacttgatatactatcgt
ttcaatactggtcctgtgggtaagggtccagggtgtggattttgggctccaatgtggagg
gtatggttgtttttccttcggggaatagttcctcttcttgagcgatggttagggaatctt
cttgcacgtcaatttgaggggcgtcattcaaaaggagtggccaaaacagtcacaaagcag
agagttgaaagccattttgatttggagcttcgagctgctgtcatgcatgacgtccttgat
gctatgccagagggtatcaagcaaaataaagcgcggactatattgcagcaccttagtgag
gcatggcgatgctggaaagctaatatcccatggaaggtccctgggttacctgtgcctgtt
gagaatatgatcctccgttatgtcaagtctaaggcagattggtggacgaatgttgctcac
tacaatcgtgagcgtatccgaagaggggctactgttgataagaccgtttgtagaaagaat
ctcggaaggttgactcgtctttggctaaaggcagaacaggaacgacagcacaattacctg
aaagatggtccgtatgtcactccggaagaagcacttgcaatttatacaactactgttcat
tggctggagtcaaggaagttttctccaattccatttcctccattgtcatacaaacatgac
acaaagttgctcatccttgcccttgagagactgaaggaatcatatagtgtagctgtgagg
ttgaaccagcagcagcgagaagagcttggtctaattgaacaagcttatgacaatcctcat
gaagctctatcacgaataaaacgtcatcttctcacccaacgtggctttaaagaggttggc
atagagtttatggatctatatagctacttgattccagtttatgaaatagagcctctagag
aaaattaccgatgcatatcttgatcaatacttgtggtacgaaggtgacaagcgccacttg
tttccaaactggattaagccagcagactcagagccgcccccacttctggtttacaagtgg
tgtcaaggtatcaacaatttgcaaggcatatgggacacaggtgatgggcagtgtgtggtg
atgctccaaactaagttcgaaaagttctttgagaagatcgatttgacaatgttgaacagg
cttcttcgtttggttcttgaccacaatattgcagactatgtgtctgccaagaataatgtg
gtcctgtcttacaaggatatgagtcatactaatgcgtatggtctcattaggggacttcag
tttgcatcgtttgttgttcaattttatggactattgcttgatcttttgcttcttggtttg
actcgagcgagtgaaattgctgggccacctcagatgcctaacgagtttatgacgttttgg
gatacaaaagtggagacacgccatcccataagactctattctcgatatatagacaaagtt
catataatgtttaagttttcccatgaagaggctcgagatcttattcagcgatatcttacg
gagcatcctgatcccaacaatgaaaacatggtgggatacaacaataagaagtgctggcca
cgagatgcaaggatgaggctgatgaaacatgatgtcaatcttggtagaagtgtcttctgg
gacatgaagaaccgtcttcctcggagcatcactactttggagtgggagaatggctttgtc
tctgtctatagcaaggataatcctaacctgctctttagcatgtgtggatttgaagtccgc
atacttccaaaaatcagaatgacccaagaagctttcagcaacacaagagatggtgtctgg
aatctgcaaaatgaacagaccaaggagaggactgcagtagcttttctgcgagttgacgat
gaacatatgaaggtatttgagaatcgtgtgaggcagatccttatgtcatcaggatcaacc
acctttaccaagatcgtcaacaaatggaatacagctctaattggtctcatgacttacttc
cgggaagccactgtacacacacaagagctcttggatctactggtcaagtgtgagaataaa
atccaaacaaggattaagattgggctgaactcaaagatgcctagtcgatttcctcctgtt
atcttctacactccaaaggaaattggtgggctgggaatgttgtcaatgggtcatattttg
atcccacaaagtgaccttcggtacagcaaacaaacagatgttggtgtaacccactttagg
agtggaatgagccacgaggaagatcagcttataccaaatctttaccgttacatacagccg
tgggaaagtgagtttattgattcacagcgggtgtgggcagaatatgcgttaaagaggcag
gaagcccaggcccaaaataggcgtcttacactggaagatttggaagattcttgggatagg
ggaattcctcgcataaatacactgtttcagaaggataggcacacattggcatatgataaa
ggttggagggttcggaccgacttcaagcagtaccaagtccttaaacaaaatccgttctgg
tggacacaccagaggcatgatgggaagttgtggaacttgaacaattaccgcactgatgtc
atccaagctcttggaggtgttgagggtattcttgagcacacgttattcaaggggacctat
ttcccgacatgggagggacttttctgggagaaggcatctggttttgaggagtcgatgaaa
tataagaagttgactaatgcgcagaggtctggtctgaaccagattccaaatagaagattc
acgctttggtggtcgccaacaattaatcgagcaaatgtctatgtgggtttccaagtgcag
ttggatctgacaggaatatttatgcatggaaagattcctacactgaagatatctttgatt
cagattttccgtgcccatttgtggcagaagatccatgagagtgttgttatggatctttgc
caagtattggaccaagagttggacgctttggagatagaaactgtgcagaaggagacgatt
catccaaggaagagttataagatgaacagctcttgtgctgatgttcttctatttgctgct
cataaatggccaatgtctaagcctagcctggttgcagagtcaaaggatatgtttgaccag
aaagcgagtaataagtactggatagatgtgcaacttcgatggggagattatgactcccat
gatattgagcgttatactagggccaaattcatggactatacaactgacaacatgtctatc
tatccatctccaacaggtgtaatgattgggcttgatctggcatacaacctgcattctgcc
tttggtaattggttccctggctcaaaacctcttcttgctcaagcaatgaacaagatcatg
aagtccaatccggccctatatgtgttgagagagaggataaggaaaggtctgcagttatac
tcttctgagcctacagagccatatttgtcatctcaaaactatggtgaaatattcagcaat
caaattatatggtttgttgatgataccaatgtctatcgtgtcacgattcacaagacattt
gaaggaaatttaacgacaaagccaatcaatggtgcgattttcattttcaatccaagaact
gggcagctgttcctgaaggttatccatacaagtgtttgggctggtcagaagcgtcttggc
cagctagcgaaatggaaaactgctgaagaggttgctgcacttgtgcgatctctccctgtt
gaagaacagccgaaacagattattgtcacgcggaaaggaatgttggatccccttgaggtt
cacttgctggatttccccaacattgttatcaagggaagcgagctgcagcttccgttccag
gcttgcctcaagatagagaaatttggtgacctgattttgaaggccacagaaccacagatg
gtcttgtttaatatatatgatgattggttgaagagtatttcttcgtatactgccttttca
agacttattttgatccttcgtgcgcttcacgtgaataatgagaaggctaagatgttgttg
aagcctgacaagtccgttgtcactgagccacatcacatctggccttctctcactgacgat
caatggatgaaggtggaggtagcacttcgagatcttatcctttctgactacgcaaagaag
aacaatgtgaatacctcagctctgacacaatcagagatcagagatattattcttggagct
gagattactccaccctctcaacagaggcaacagatagctgagattgagaaacaggcaaag
gaagccagccagcttactgcagtcacaacaagaactacaaatgtccatggtgatgagctc
attgtcaccaccacgagcccttacgagcaatctgcattcggttccaaaacagattggcgt
gtacgtgcaatatcagctactaatctttacctcagagtcaatcacatatatgtgaactca
gatgacataaaggaaaccggatacacctacatcatgccaaagaacattttgaagaagttt
atatgcgtagcagatcttcgtactcaaattgctggatatttatatggtattagtcccccg
gataatccccaagtgaaggagatccgttgtgttgtgatggtgccacaatggggaagtcat
cagcaagttcacctgccgtcatctcttcctgagcatgatttcctaaatgatcttgagccc
ttgggatggttgcacacacagcctaacgagctgcctcagctgtcaccacatgatgtaacc
tctcattcccgtgttctggagaacaacaagcaatgggatggagaaaaatgcatcatcctg
acctgcagtttcactccgggctcctgctctttgacgtcatataagttgacccaaaccgga
tatgaatgggggcggcttaacaaggacacaggcagcaatcctcacggttaccttcccacc
cattatgaaaaggttcagatgctgctgagtgaccggttcctcgggttttacatggttcct
gagaatggaccgtggaactacaacttcatgggagtgaagcacacggtgagtatgaactac
agtgtcaaactcggatccccaaaggagtactatcacgaggagcatcgacccactcatttc
ctagagttcagcaacatggaggaggctgacattgcagagggagatcgcgaggacacattt
acttga
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integrated database retrieval system
