Arabidopsis lyrata (lyrate rockcress): 9324031
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Entry
9324031 CDS
T01578
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9324031
03036 Chromosome and associated proteins [BR:
aly03036
]
9324031
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
9324031
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
9324031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
HTH_44
Tex_central_region
HHH_3
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
9324031
NCBI-ProteinID:
XP_020865973
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MQRINEEPQIHYDPVENRDNDDEEEDEHDQYEYGDGFLVDSSDDGEEEEEEDEEQRHCNE
KKSRNRRKKDEAFSLHEDDYLLLEDNNVDFQRNKYKRLKKSSEEEEEDKINEDDDDDLSH
FIVDEDVPGDHGWRRKINKFKQGTDSNALRYANANDIFGDPEELLKLRRKDLAYNEKIER
KLEDEFEPIVLSEKYMTQKDDEIRKLDVPERMQIFEEVTGNAPVDDISIEEESNWIYARL
VQEHGPSFLVNKDDIVRFLEMSHVQKLEIPFIAMYRKEQCRSLLDSSDDDGSDFNLLKKL
ETKWNKVFWMIQDLDRKWLLLRKRKTALFGYFTKRFEEETCRSDLNKSLFESVMKSLKAA
ETEREVDDVDSKFNLHFPHCEIDEGQYKRPNRKSHYSICSKFGIREFANKFGYSAEQLGF
ALSLEKVFVDELEDAKKTPEEMALYYKCAMFEDPQVVLKGARHVAAVEISCEPLIKKYVR
GIYMENAVVSTSPTPDGDVVIDSFHRFSAVKWLREKPLRKFEGTQWLLIQKAEEEKLLQV
TFKLPENQMNRIISECSEHYLSVGVSKYAQLWNEQRKLILEDAVHGFLLPSMEKEARSLL
TSRAKTRLLSEYGQVLWKKVSSGPYRRNNNNTSDEEAAPRVLACCWGPGNPETTFVMLDS
SGELVDVLYAESIALRFRDVNDQKRKKKDQDRLRKFIRDHQPNLVALAAANLSCVRLKDE
IYEVIFQMVEELPSVVEAGIYDLPVVYADESLPRLYENSRISREQLPQQAGIVKRAVALG
RYLQNPLAMISTLCGPGKDILSWKLHSLQDFLDPDEKYEMVEQVMVDLTNQVGIDINLAA
SHEWLFAPLQFVSGLGPRKAASLQRSLVRSGSIFVRKELINHGIGKKLFVNAAGFLRIRR
SGLACSSSQFIDLLDDTRIHPESYGLAQELAKDVYTHDTVRDDEDDAIEMAIEYVRDEPA
SLRKIVLDEYLRSKNQENKKETYSFIMRELSCGFQDWRSLFKEVDPDEEFYMISGETKET
IGEGRIVQATVKKVSSGKAKCVLDCGLPGILLKEDYSDDGRDIVDLSNKLCEGYIVTCKV
KSILKQRYHVLLVCKESEMRKNRNLRDVDDYYHEEERKNVLIEKEKAPKEKKQFKSRMIV
HPRFQNITAEQATEYLSYKNIGESIVRPSSRGLNHLTLMIKIFDNVYANKEIIEGEKENK
DIVSLQRIGKTLKIGIETFEDLDEVMDRYVDPLVTHLMTMLNYRKFRTGTKSEIDDLLRV
EKGVNPKMVVYSFGVSHEHPGSFILSYIRSANPHHEYIGLYPKGFKFRKRMFGDLDKLAA
YFKRHVDDQGHY
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggatcaacgaagagccacagattcactacgacccagtcgagaatagagacaac
gatgatgaagaagaagatgagcatgatcagtatgagtatggagatgggtttttagtggat
agttctgatgatggagaagaagaagaagaagaagacgaagaacagagacattgtaatgag
aaaaagagtagaaatcgaaggaagaaagacgaagcctttagtcttcacgaagatgattat
cttcttctagaagataacaacgtcgatttccaaagaaacaagtataaacgtttgaagaaa
tcttcagaggaagaggaagaagataagatcaatgaggatgatgatgatgatttgagtcac
ttcattgtagatgaggatgttcctggtgatcatggatggaggaggaagataaataaattc
aagcaaggaactgattccaacgctttacgatacgctaacgctaatgatatatttggtgat
cctgaagaattgttgaaacttcggagaaaggatttagcgtataacgaaaagatcgaaaga
aagttagaagatgagtttgaaccaattgttctctctgagaagtatatgacacagaaagat
gatgaaattaggaagcttgatgttcctgagagaatgcagatattcgaagaagtcactgga
aacgctcccgtcgatgatattagcattgaagaagagagcaactggatttatgctcgattg
gttcaagaacatggtccaagttttttggttaacaaagatgacattgtgagatttttggag
atgtctcatgtgcagaagttagagataccgtttatagctatgtaccggaaggagcagtgt
cggagtttgttggacagttctgatgatgatggtagtgatttcaatcttctcaagaagctt
gagaccaagtggaataaagtcttctggatgattcaagatttggatagaaagtggcttctt
cttcggaaaaggaaaaccgcgttgtttggttactttaccaaacgttttgaagaagaaacc
tgcaggtctgatctgaataagagtctttttgaatcggttatgaagtctcttaaagcggcg
gagacagagagagaagttgatgatgtagactcaaagttcaacttgcattttcctcattgt
gagatcgatgaaggacagtataagaggccgaataggaaatcgcattatagcatctgtagc
aaatttggaatccgggaatttgcaaacaagtttggttatagcgctgagcaattgggattt
gcgttgtctcttgagaaagtttttgttgatgagcttgaagatgcaaagaaaacaccagag
gagatggcattgtactataaatgtgcaatgtttgaagatcctcaagttgttcttaaaggc
gcacggcatgtggctgcggttgagataagctgcgagccattgattaaaaagtatgttcgc
gggatttatatggagaatgcagtagtctcaacgagtccaacaccagatggggatgtggtt
atagattctttccatcggttttctgcggttaagtggttacgcgaaaagccattgagaaag
tttgaaggtacacaatggcttcttattcagaaagcagaagaagagaagcttcttcaagta
actttcaagctgcctgagaatcagatgaataggataattagtgaatgcagtgaacactat
ctaagtgttggtgttagtaagtatgctcaactctggaatgagcagaggaaattgatactg
gaggacgcggttcacggttttcttttgccgtcaatggagaaagaagcaagatccttgcta
actagcagagcgaagactcggttgctttcagagtatggacaggttttatggaaaaaagtg
tcttcagggccatatcgaaggaataataataatacctcggatgaggaagctgcgccgagg
gtcctagcttgttgttggggacctggaaatccagaaactacatttgtgatgcttgattca
tcgggagagttggttgatgtgctttacgcagaatccattgcattgcggtttcgggatgta
aatgaccagaaacgtaaaaagaaggatcaagatcgtcttcgaaagtttataagagaccat
caaccaaatcttgtggctttagcagctgcaaatttgagttgtgtacgtctgaaggatgag
atttatgaggttatattccaaatggtggaagaactgccgtctgttgtagaagctgggatt
tatgacttaccagtggtttatgcggatgaatctcttcctaggctatacgaaaattctaga
atctcaagagaacaactacctcaacaggcagggattgtgaaacgcgcagttgctcttgga
cgttatctccagaatccattagcaatgatctcaaccttatgcggtccaggtaaagatatt
ttgtcatggaagctacattctttgcaagattttcttgatccagatgagaagtatgagatg
gttgagcaagttatggttgacttaacaaatcaagttggaatcgacattaatctggctgcg
agccatgaatggctttttgctcctttacagtttgtttcagggcttggccctaggaaagct
gcatctttgcagaggtctcttgttagatctggttcgatatttgtccgcaaggaactgata
aatcatgggattggtaaaaaacttttcgtaaatgcagctggtttcttacggattcgtagg
agtgggttggcttgtagtagcagccaatttattgacttgttggatgacactagaatacat
ccggaatcatacggtcttgcgcaagaattggcgaaagatgtttatactcatgatactgta
agagatgatgaggatgatgcaatagagatggcgatagagtatgtaagagatgagccagct
tctttgaggaaaatcgttcttgatgagtatttgagaagcaagaaccaagagaataagaag
gaaacttatagttttatcatgagagaattaagctgtggttttcaggattggcgaagtctg
tttaaagaggttgatccagatgaagagttttatatgatttctggtgaaaccaaagaaact
attggtgaagggagaattgtgcaggccactgttaagaaagtatcaagtggtaaagccaaa
tgtgtattagattgtggattacctgggattctcttaaaggaagattactcggatgatggt
agagatatcgttgatttatcaaacaaactgtgtgaaggctatatcgtcacttgcaaggtc
aaatcgattctaaagcaaaggtatcatgtgttacttgtctgcaaagaaagcgaaatgaga
aagaacaggaatctccgggatgtcgatgattattaccacgaggaggaacgaaaaaatgtc
ctgatagagaaagagaaagcccctaaagagaagaagcagtttaagtctcggatgattgtt
catcctcggtttcagaacatcactgctgagcaagcaacagagtatttgtcttataagaat
attggagaaagcattgttcgtccaagctcacgaggactgaatcatctgactttgatgatc
aagattttcgataatgtgtatgctaacaaggagataatcgaaggtgagaaggagaacaag
gacatagtgagcttacaacgtattgggaaaacattgaaaattgggattgaaaccttcgag
gatctagatgaggtaatggatcggtatgttgatcctttggtaactcatcttatgacaatg
ctaaactaccgcaaatttcggactgggacaaagtcggaaatagatgatcttcttcgggtt
gagaagggcgtaaatccgaaaatggtagtttacagttttggtgtttcgcatgaacatcca
gggagctttatattgtcttacatacgatccgcaaacccgcaccatgagtatatcggttta
tatccaaagggattcaagttcaggaaaagaatgtttggagatcttgataagcttgctgct
tatttcaagagacatgttgatgatcaaggccattactaa
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