Arabidopsis lyrata (lyrate rockcress): 9324037
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Entry
9324037 CDS
T01578
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03410
Base excision repair
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9324037
03410 Base excision repair
9324037
03420 Nucleotide excision repair
9324037
03430 Mismatch repair
9324037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aly03032
]
9324037
03036 Chromosome and associated proteins [BR:
aly03036
]
9324037
03400 DNA repair and recombination proteins [BR:
aly03400
]
9324037
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
9324037
DNA Replication Termination Factors
ELG1-RFC complex
9324037
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
9324037
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
9324037
Check point factors
HRAD17(Rad24)-RFC complex
9324037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Rad17
AAA_16
Mg_chelatase
Viral_helicase1
nSTAND3
AAA_11
RCF1-5-like_lid
RuvB_N
AAA_5
AAA_19
AAA_28
AAA_24
AAA_assoc_2
AAA_30
DNAX_ATPase_lid
RNA_helicase
AAA_25
MeaB
ABC_tran
bpMoxR
KTI12
AAA_18
IstB_IS21
NTPase_1
AAA_7
NPHP3_N
SLFN-g3_helicase
T2SSE
DO-GTPase1
AAA_29
Motif
Other DBs
NCBI-GeneID:
9324037
NCBI-ProteinID:
XP_002886430
UniProt:
D7KU15
LinkDB
All DBs
Position
Unknown
AA seq
334 aa
AA seq
DB search
MAASSSSTSSDGGYNNPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGT
GKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVIL
DEADSMTSGAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILG
RLLVVVEAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHP
LHVKNIVRNVLESKFDDACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET
GFAHMRICDGVGSYLQLCGLLAKLSIARETAKAP
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcttcttcttcaacctcttccgacggcggatacaataacccatgggtggag
aaatacaggccgagcaaagtagttgatatcgttggaaacgaagacgccgtctccagactt
caagtcattgctcgcgacggaaacatgcctaatctaatcctttccggtcctcctggaaca
ggtaaaaccacaagcattttggctcttgctcacgagcttcttggcccgaattataaggag
gctgttctggagttgaacgcatctgatgataggggtattgatgttgttaggaacaagatt
aagatgtttgcgcagaagaaagtaacacttcctccagggcgtcataaggttgtcattcta
gatgaagctgacagcatgacatctggagcacaacaagcattgaggagaacgattgaaatc
tattcgaactcaacacggtttgcacttgcttgcaatacgtcatccaagattattgagccc
attcagagtagatgtgccttggttcgattctctagattatctgatcagcagatactaggc
cgtcttttagtggtggttgaagcagagaatgttccgtatgtacccgaaggccttgaggcg
ataatctttacagctgatggtgacatgaggcaagctctgaacaacttgcaagccacattc
agcgggtttcggtttgtcaaccaagaaaacgtcttcaaggtctgtgaccagcctcacccg
cttcatgtcaagaacattgttcgcaatgtgctggaaagtaagtttgacgatgcttgtcac
ggtttaaagcaactctatgatttgggctactctccaaccgacattatcacaacgcttttc
cgtataataaagaattacgatatggctgagtatctgaaacttgagttcatgaaggaaact
ggatttgcgcatatgagaatctgtgatggagttggatcttatcttcagctatgtggtctt
ctggctaaattatccattgctcgtgaaacagcgaaagcaccttaa
DBGET
integrated database retrieval system