Arabidopsis lyrata (lyrate rockcress): 9324110
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Entry
9324110 CDS
T01578
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 12
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9324110
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9324110
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9324110
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Transgly
IQ_SCN5A_C
Motif
Other DBs
NCBI-GeneID:
9324110
NCBI-ProteinID:
XP_020891118
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MNHQRSKFARLDHTRNLGSSVDGKIKSVRGGLKKFYQKMKTLKNWRKTVLLACVVDLAID
PLFLFIPLIDSNKYCFTFDKKLVAVVCVIRTFSDTFYVIHIIFHLITEIMAPRPEASFRG
EISVHSKATRKTRHLFQFIVNIFSVLPIPQVVVLTLIPRSASLVSEKILKWIILCQLLPR
IIRMYPLYKEVTRAFGTVAESKWIGAALNLFLYMLHSYVFGAFWYVSAVEKKSKCWRDAC
ARTSDCDLTNLLCGRGGRDNSRFLNTSCPLIDPAQITNFTDFNFGMFIDALKSGVVEVKP
RDFPRKFLYCFWWGLRNISALGQNLETSNSAGEICFAIIICVSGLLLFAVLIGNVQKYLQ
SSTTRVDEMEEKKRDTEKWMSYRVIPQYLKERIRRFEDYKWRETKGTEEEALLRSLPKDL
RLETKRYLYLDMLKRVPWLDFMDDGWLLEAVCDRVKSVFYSANSYIVREGHPVEEMLIVT
RGNLKSTTGSHEIGGRYNCCYLQAGDIYGELLFNGSRLPTSTRTIMTLTEVEGFILLPDD
VNFIASHLNAFQRQKLKQTFRFYSEKWRSWAAFFIQRAWREHCKRKLSKILRAKRDNENI
PQGKQLNLESTLYVSRFVSKALQNRRKDTADCSTSLDMSPPVPHKPADLEFARDEA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcagaggagtaaatttgctaggcttgatcatactaggaatttggggagttct
gtggatggaaaaatcaaaagtgttagaggaggcttgaagaagttttatcagaagatgaaa
acactgaaaaactggaggaagactgtcttgttagcttgcgtggttgatttggctattgat
cctttgtttctctttatccctttgattgattctaataaatattgcttcactttcgacaag
aaacttgtagcagtagtttgtgtcattcgtacttttagtgacacattctatgtgattcac
atcatatttcatcttataaccgagatcatggctcctcgtcctgaagcatcttttagaggc
gagatttccgtgcattctaaggctacacggaaaacacgtcacctctttcaattcattgtt
aacattttctctgttctccccattcctcaggtggtggttctaactctcattccacggtct
gcgtcgctagtgtcagagaaaatactgaaatggattatactttgtcaattgttaccaaga
atcattcgtatgtatccgctttacaaagaagtgacaagagcctttggtacggtggcagaa
tcaaagtggattggagctgctttaaaccttttcctttacatgctgcacagttatgtgttt
ggggctttttggtacgtgagtgcagtagaaaagaaaagcaaatgttggcgtgacgcgtgc
gctaggacatccgactgcgatctcacgaatctgctttgtggacgaggtggcagagacaac
agtcgtttcctcaacacttcatgccccttaatcgaccctgcccaaatcacaaacttcaca
gacttcaactttgggatgttcattgatgcattgaagtcaggtgtggtagaggtgaaacca
agggattttccgaggaaattcctctattgcttttggtggggtctccgtaatattagtgct
ttgggccaaaacctggagacaagcaactctgcaggggagatttgttttgctatcatcata
tgtgtctctggtttactcttgtttgctgtgctcattggaaacgttcagaagtacttgcaa
tcatcaaccactagagtagatgaaatggaggagaaaaagagagacactgaaaaatggatg
tcctatcgggtgataccacagtatttgaaggaacgcattaggagattcgaagattacaaa
tggcgagaaaccaaaggcaccgaagaggaagctcttcttcgtagtcttccaaaagacctc
agactcgaaaccaaacgctatctttacttggatatgttaaagcgtgttccatggcttgac
ttcatggatgatggttggctactagaagctgtgtgcgaccgagtgaagtctgtgttctac
tcagcgaacagctacattgtgagagaggggcacccagttgaggaaatgctgattgtaacc
agaggcaatctgaaaagtacaaccggatctcatgaaataggtggccgctacaattgttgt
tacctccaagctggtgacatatatggagaacttctcttcaatggttctcgccttcccacc
tcaaccagaaccataatgactctgactgaagttgaaggcttcattctcttgcctgatgat
gtcaattttatagcgtctcatttaaatgcctttcaacgacagaaactcaaacaaacattc
aggttctattcagagaaatggcgctcatgggcggcattcttcattcaaagggcatggagg
gaacattgcaaaaggaagctttctaagatcttacgtgccaaaagagacaacgagaacatt
ccacaaggcaagcaactcaatcttgaatcaacgctctacgtgtcgagatttgtgtccaaa
gctttgcaaaatcgacggaaagatacagcagattgttccacttctcttgatatgtcacct
ccggtacctcataaaccagccgatctcgagtttgcaagggatgaagcatag
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