Arabidopsis lyrata (lyrate rockcress): 9324176
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Entry
9324176 CDS
T01578
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9324176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9324176
03019 Messenger RNA biogenesis [BR:
aly03019
]
9324176
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9324176
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
9324176
U7-dependent histone pre-mRNA processing factors
9324176
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
9324176
NCBI-ProteinID:
XP_020890059
LinkDB
All DBs
Position
Unknown
AA seq
693 aa
AA seq
DB search
MASSSASLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGM
AALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDY
VKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA
GVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV
AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN
DRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKN
ACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM
PPNIILVHGEANEMMRLKQKLFTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAGK
TPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKI
FESVESSTDEESGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISRE
VPKIVVEEEDAVKSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKES
GEVESEHSGLKERVRVAFERIQSAVKPIPLSAS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcttctgcatctctgaaaagaagagagcaaccaatttcgcgagatggagat
caacttatcgttactcctttaggtgccggaagtgaagtgggtcgttcctgtgtttacatg
tccttcagaggcaaaaatattctgtttgattgtgggattcatcctgcgtactcaggcatg
gctgcgttgccttacttcgatgagattgatccttcgtccattgatgtcctcttgattact
cactttcatatagatcatgcagcatccctaccttattttctggagaagacgacattcaat
gggcgggttttcatgacacatgcaacaaaggcaatctacaagctgttgcttacagattat
gtaaaagtgagcaaagtgtctgtggaagatatgttgttcgatgaacaagatatcaacaag
tccatggacaaaattgaggtaattgatttccatcaaacggttgaagtaaatggcataaag
ttctggtgttacacggcaggccatgttttgggtgcagccatgtttatggtggatatagct
ggtgtccgaatcctctacacaggcgactattcccgtgaggaagaccgacatctgagagca
gctgagcttcctcaattctcccctgacatatgcatcattgaatccacttctggtgtccag
cttcatcaatctcgtcatattcgtgagaaacgcttcactgatgtaatccattcaacagtt
gctcagggcggacgtgtgctgatcccggcttttgcactaggccgtgctcaggaacttctc
ttgattttagatgaatactgggcgaaccacccagatctacacaatatcccaatctactat
gcatcaccgctcgccaaaaagtgtatggcggtttaccaaacctacatattgtctatgaac
gacagaatccgcaaccagtttgcaaattctaatccgtttgtgttcaagcacatttctcca
ttaaacagcattgatgattttaatgatgtcggtccatctgtggttatggctactcctgga
ggtcttcaaagcggtctctcaaggcaactctttgacagctggtgttcagataagaaaaac
gcttgtatcataccgggttatatggtggaaggtacactggcgaagacgataattaatgaa
ccgaaggaggtgactcttatgaatggtcttactgctccactcaacatgcaagtgcactat
atctcgttctctgctcacgcagattacgcgcagacgagcacgttcttgaaagagctcatg
cctcctaacatcatccttgttcatggtgaagctaacgagatgatgaggctcaaacagaaa
ctcttcacggagtttcccgatggaaacacaaagatcatgaccccgaagaactgtgagtcc
gttgaaatgtattttaattctgagaaattggcgaaaaccattgggagattggcgggaaaa
acacccgatgttggcgatacagtgagcgggattctggtgaagaaagggttcacttatcag
ataatggcacctgatgaactccatgttttctcacagctatcaacagcaactgtaactcag
cggattacaatcccgtttgtaggagctttcggtgtgataaaacatcgcctcgagaagatt
ttcgagagcgtggaatcttcgacagatgaggaatcggggcttccagcactgaaagtacat
gaaagagtaacggtgaaacaagagtcagagaagcacatctcacttcagtggtcatcagat
ccgataagtgacatggtttcagactccattgtagctctgattctcaacattagccgcgaa
gtccccaagatcgtcgtggaagaagaagatgctgtgaaatccgaggaagagaacgggaag
aaagttgagaaagttatatatgcacttcttgtgtcactcttcggggatgtgaaactaggc
gagaatgggaagcttgtgatcagagtcgatggtaatgtcgctcagctcgataaagagagt
ggagaggtagagagtgagcattcaggtcttaaggaaagagtaagagtagcttttgagcgg
attcagagcgctgtgaaaccaatccctctctcagcttcttag
DBGET
integrated database retrieval system
