Arabidopsis lyrata (lyrate rockcress): 9324354
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Entry
9324354 CDS
T01578
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9324354
Transcription machinery [BR:
aly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
9324354
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_36
PII1_C
Motif
Other DBs
NCBI-GeneID:
9324354
NCBI-ProteinID:
XP_002886771
UniProt:
D7KZ14
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MMATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASSSNY
SPSFPSSNRHTQSAKALKESVDVASTEKPWIHNGTDKELEEEGYDDDLIGHSVEALLLLQ
KSMLEKSWNLSFEKAASSESSSKRTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV
SDVSSGKQVRGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQL
AVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLR
GIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKG
ITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRVENN
PWHGYDDLALKEEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQV
GLVALEKLKHAARKRKMEAMILKN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatggctactgcagctgttataggactcaacactgggaaaagattgttgagttcatcg
ttttatcactcagatgttaccgagaagtttttatctgtaaatgatcattgttcatcacag
tatcatattgcttcaacgaaaagcgggataactgcgaaaaaggcgtcatcatcgaactat
agtccgagttttccttcatcgaatcgtcacacacaatctgccaaggctttgaaagagagt
gtagatgttgcttctactgagaagccatggatacataatggaactgataaggaattggaa
gaggaaggttatgatgatgatctaattggtcattctgttgaggcacttttactgctacaa
aagtctatgttggagaaaagttggaatctttcgtttgagaaggcggcgtcaagtgagtcc
tcgagcaagaggactatccggaagaagaagattccggtcatcacctgttcagggatttca
gctaggcaaaggaggattggtgctaagaagaaaactaatatgactcatgttaaagcagtt
tcagatgtttctagtggtaagcaagtcagaggttatgtgaagggtgtaataagtgaagat
gtgcttagtcacgcggaagttgtgcgcttgtccaagaaaatcaaatctggtcttcgtctt
gatgatcataagtcaagattgaaggatagattaggctgtgagccttctgatgaacagctt
gcagtatccttgaagatatctcgggccgagcttcaggcatggttgatggaatgtcatcta
gctagagagaagttggctatgagcaatgtgcgtttggttatgtctattgctcagcgatac
gataatttgggagcagaaatgtctgatcttgttcagggtggtcttatcggacttttgcgg
ggaatagagaaatttgattcttccaaaggtttcagaatttcaacttatgtatattggtgg
attcgacagggtgtctcaagagcattagtggacaactcaagaaccttgaggttacctact
cacctacatgaaagactcggtctaatccgaaatgcaaagcttagacttcaggagaaagga
atcacaccctctattgataggattgcagagtctctaaacatgtcgcagaagaaagttaga
aatgcaacagaggctgttagcaaaatattttctctagacagagatgcatttccttctttg
aacggtctccctggagaaactcatcacagttacattgcggataatcgtgtggagaacaat
ccctggcacgggtatgatgatctggcacttaaggaggaagtaagcaagcttataagtgca
acactcggagaacgggaaagggagatcatccgattatactatggtctagacaaagaatgt
ctcacctgggaagacattagcaaacggataggattatcgagagagagggtgagacaggta
gggcttgtggcactggagaaactaaaacacgcagcgaggaagagaaaaatggaagcaatg
atcctcaagaattga
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