Arabidopsis lyrata (lyrate rockcress): 9324366
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Entry
9324366 CDS
T01578
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04120
Ubiquitin mediated proteolysis
aly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9324366
04120 Ubiquitin mediated proteolysis
9324366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9324366
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9324366
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9324366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
zf_RING_Vps8
Prok-RING_4
zf-HC5HC2H
zf-RING_Vps41
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
9324366
NCBI-ProteinID:
XP_020890914
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MIQLRVYAGLSTLAALVVIYHAFSSRGQFYPATVYLSTSKINLVVLLNMGLVLMLSLWNL
VKIVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSVGFISLVVTLLLIKGLHWMA
QKRVEYIETTPSVTLLSHVRIVSFMVFLLLLDGLLTYSSIRQLIQSRKASMSVFFTFEYM
ILATTTVSIIVKYAFYVTDILKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNYG
LPLHLIRELYETFRNFKIRVTDYLRYRKITSNMNERFPDATPEELSVNDATCIICREEMT
SAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENATSTASGNRGPHQESLQQGIGT
SSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSVVYPSSANTLVWSQGCSLLPQT
ELEAQRRFLESQIEVLQNQLRLLEKPATVDTKGKSVAETAE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgattcagctaagggtttacgctggtctaagtactcttgcggcattggttgtgatttat
catgcttttagtagcagaggtcaattttacccagcgactgtgtatctatcaacgtccaag
atcaatttggtggttcttttgaacatgggtttggtcttaatgctcagtttatggaatctt
gtcaaaattgtgtttttgggttctcttagagaagctgaagttgagcgtttgaatgagcaa
gcttggagagaactcatggagattctctttgctattactatttttagacaggacttctct
gttggttttatctctttggttgtgactcttttgttgattaagggtttgcattggatggct
cagaagagagtggagtatattgagactactccttctgtgactttgctctctcatgttcgt
attgtttcgtttatggtgtttcttttgctcttagatggtcttcttacatatagttctata
cggcaattgattcagtcccggaaggcttctatgtcagtcttcttcacgtttgagtatatg
attctggcaacaacaactgtttctattattgtgaagtatgccttctatgtcactgatata
ctcaaggaaggtcaatgggaagggaaaccagtatacactttctatctggagcttgttcgt
gacttgcttcacttgtccatgtatctttgcttcttccttatgatattcatgaactatggc
cttcccttgcatctaatacgggagctctacgaaacgttcagaaacttcaagattcgtgtg
actgattacctcagatatcgtaaaatcacttccaatatgaatgaacggtttcctgatgca
actcctgaagaacttagtgtaaatgatgccacttgtatcatatgtcgtgaagaaatgacc
tcagcgaagaaattagtatgtggccatctatttcatgtgcattgtttgcggtcatggttg
gaacgacagaacacatgtcccacctgcagagcactggttgtcccagctgagaatgctaca
tcaacagcttctggaaaccgtggaccacaccaagaatccctgcagcaaggaatcggtact
tcaagttctgatggtcagggttcttctgtttctgctgctgccagtgagaatatgagcagg
cacgaggctaggtttcaagctgctgcttctgcagcctctatatatggcagatccgttgtt
tatccatcttctgcaaacacactagtatggtctcaaggttgttcattgcttcctcagacg
gagttagaagctcaaagaagatttcttgagtcccaaatcgaggtgttacaaaaccaactt
cggcttctggagaagccggcaactgtagatacgaaaggaaagtcagttgcggaaactgct
gagtga
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